808d6fc66e57f4d79b56beb9cabee853 *DESCRIPTION
8a930fca46579840227a82b1ebf00a9d *LICENSE
762ca4c59f3cee439ac4746fb423a2e2 *NAMESPACE
e4554fa485d692437d0d5f3bd3cfe026 *NEWS.md
afb0d2b977901ef0b9d007aa9a68103c *R/MphCalcLogL.R
8d415e2ddeae8ca0a584875c22b6c160 *R/MphEM.R
b7792b4793d6ab8324463c772e0104b0 *R/calc_XHiY.R
5688d85aab971162df74cf24b8ba6b67 *R/center_kinship.R
771432329692d879cb44366b8247aed5 *R/eigen2.R
05e42f3b02a2f3d43121dfc5a2a72c7a *R/gemma2-package.r
a8bfeafba67d9c4886741a7c7447bb9d *R/stagger_mats.R
e8c1138464f6766c4e9e682deded62ca *R/update_u.R
908bda5a2b9a72101f6ab6ce168a89e8 *README.md
845b0c9c6fd27e7dd7e4759497f3e8ce *build/vignette.rds
04d2106354f7df228f8f3216f4aa16a5 *inst/doc/compare-with-GEMMAv096.R
1b4b37dca76632a949a1a6d91b7bb0d0 *inst/doc/compare-with-GEMMAv096.Rmd
b5bfd8fb4a72b69a23aa74b289cbf18b *inst/doc/compare-with-GEMMAv096.html
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/covariates
2b91d5267e129ca7cc878e2715a53ca7 *inst/extdata/demo6.txt
461bc921d7a79e73dfd36745ce7c3115 *inst/extdata/mouse100.cXX.txt
d678a92d08cfaa7e76acdef8dce0fd1d *inst/extdata/mouse100.geno.txt
fe99ca5097d67108439720f5714552dc *inst/extdata/mouse100.pheno.txt
b634299fa304978eaa067db4c3cc8897 *inst/extdata/mouse100_1snp.geno.txt
205360576c8a6bb565998b8b917e6a5c *inst/extdata/mouse100_CD8MCH_lmm_demo6_.assoc.txt
8b7b31055255c9d92b43cedfc2964c3b *inst/extdata/mouse100_CD8MCH_lmm_demo6_.log.txt
0d0d27aa39d0fdcc4bf659c688d9f62f *inst/extdata/mouse_hs1940.anno.txt
f0e3a2ee8a6d2d39ec9ab0505ea30016 *man/MphCalcLogL.Rd
63c1b6d47f54a6e50a2f5321bf97fb0e *man/MphEM.Rd
c8a6fadd0f4aab7b900e44864122e844 *man/UpdateRL_B.Rd
41ec961e86299e8e43e51ec96856f3fb *man/calc_XHiY.Rd
a5a1b6e723e1e240c26cc7130673877f *man/calc_omega.Rd
274237d597ac96dc441873fb0e37a49b *man/calc_qi.Rd
1920a6e6c4f186ced138fbf8d378ada6 *man/calc_sigma.Rd
a38744ecd4a959f0a09a915d4783fae3 *man/center_kinship.Rd
7dbe1bd4b4258476e174990a56fdf1f8 *man/eigen2.Rd
95025dc9543ca0917063dffe52a95e37 *man/eigen_proc.Rd
513074149d888cfbea6cef9d17390da2 *man/gemma2.Rd
febdde8d7777cace546ebee837044bb7 *man/stagger_mats.Rd
0e1ef770244dbb98f847baeda0ea7ee6 *man/update_e.Rd
f527ec99d4360533c3e264861337c743 *man/update_u.Rd
3672ea963a62c81562b0e49d73e76055 *man/update_v.Rd
4751b7e8e6e8d61a9bbcb7a332eff9d2 *tests/testthat.R
ac5d8fff47d586526bd9f4313948f0d6 *tests/testthat/test_MphEM.R
7efd73e1beebc6792d6b962ea4b7e94b *tests/testthat/test_calc_XHiY.R
07154a392b6142aa0a6e03bd4d30a1bf *tests/testthat/test_calc_qi.R
8e946d801112aecf47ada71bedca9498 *tests/testthat/test_calc_sigma.R
145f2ef7cd4d6b0546884fe287a4cab4 *tests/testthat/test_eigen_proc.R
8e2581e85d96578bbb76f6cc93777bd1 *tests/testthat/test_updateRL_B.R
90f3d5d9948404b901e13a899017ca82 *tests/testthat/test_updateU.R
1b4b37dca76632a949a1a6d91b7bb0d0 *vignettes/compare-with-GEMMAv096.Rmd
2bf85932915e1c426c6966152b921591 *vignettes/gemma.bib
