df2930c5691585a5c001c697178b3bd9 *DESCRIPTION
f160a94280ce3d457ccdc2c26e8a8856 *NAMESPACE
2725020a0e23309479e2107f31883a44 *R/RcppExports.R
4b5da5315c50d205c578550639af6be2 *R/rags2ridges.R
6ef4709377fa6ed94c20fbbaf49b31d2 *R/rags2ridgesDepr.R
6e25f577efeae03b3f7262b41a6582ae *R/rags2ridgesFused.R
2b6a4ad70b4d55b0e2989e2d4ffb77fa *R/rags2ridgesMisc.R
76581a67655921223e59b8eb50306f8d *R/rags2ridgesVariants.r
498af6a977b896bba8aa39110823852e *README.md
418f69b45eb060fb5b2a0f9b1950b832 *data/ADdata.rda
d78d091c93d19c75598c1ef60172f8ac *inst/CITATION
31ab797694f7e8c8e48183b4767df3d8 *inst/NEWS.Rd
cdf52f862a37230f3d0e8dca2deba14b *inst/RAGS.png
593f71f187e0281db6d0414fadb7397e *inst/include/rags2ridges.h
49979bf72fe31a4ff0b7fc2ab8b40ce1 *inst/include/rags2ridges_RcppExports.h
c9fb300e43e9f5855f588cd603132d9f *man/ADdata.Rd
c1cbdde2bf5f355301d99d422171f324 *man/CNplot.Rd
a1abf1f067aead87ae0288eb222200de *man/Communities.Rd
8ecb8718367d11ee7e66f615fba3d260 *man/DiffGraph.Rd
ef9bfba346e8bfbb083582d536dfd921 *man/GGMblockNullPenalty.Rd
167f9713a5ba622a83530c5a23c224f8 *man/GGMblockTest.Rd
9f2879623a7a9156aca467ef87b04816 *man/GGMmutualInfo.Rd
e458138ab50926371993178538486303 *man/GGMnetworkStats.Rd
d13cd1104830ee1e77c258a61f43507b *man/GGMnetworkStats.fused.Rd
c3c168186cb9b5283b7418844ae2fe62 *man/GGMpathStats.Rd
02f16fbbc810d4791258d5869555f4b0 *man/GGMpathStats.fused.Rd
02d2f08e0e46a4f315f217b38e666e94 *man/KLdiv.Rd
3afe09c2ff0a3fb74b05debba75e22ce *man/KLdiv.fused.Rd
ad08315fed91be312a4eeb781b972626 *man/NLL.Rd
1609908fd9c56393049c4a7da2053816 *man/Ugraph.Rd
bb8917c989495b174282aca968bdc869 *man/Union.Rd
20186b23de0f5eb6c92580e12e2b2c5c *man/adjacentMat.Rd
db6d32b37bdcab51e230405ba58e559b *man/armaRidgeP.Rd
cb6dee2119c03b1f8351e8cc56ad9892 *man/conditionNumberPlot.Rd
7cef8dacbe2142bd56338b230b309919 *man/covML.Rd
e64335c233331d3ae133ed4a56a2ad6b *man/covMLknown.Rd
96954277567c69f8a7b99280fe947008 *man/createS.Rd
d99b1040c903f716ac8460481adbd77a *man/default.penalty.Rd
8ac7701b4fc5410e827d4f2d03b4cd40 *man/default.target.Rd
47efc7d32afc77b12b89359ef90a110b *man/default.target.fused.Rd
cb7dee33b22e00eef1190bdefc4b651a *man/edgeHeat.Rd
5e7afe4fd70ee75ca8acfe144ad9f667 *man/evaluateS.Rd
c755d6be91389bb2af25cf472e96baab *man/evaluateSfit.Rd
d67b0b7920139415ddf37d0fe1fdf2e7 *man/fullMontyS.Rd
53b2485557256fd5ef7606936c81ef02 *man/fused.test.Rd
a8e91371f0a6dc6435648156e882baf7 *man/getKEGGPathway.Rd
c7a489f35cb2bdcdfe2834b0d305ab88 *man/is.Xlist.Rd
aa48af9c9d5f4dba595ac9bd34c07a7e *man/isSymmetricPD.Rd
ff57177cce6e837afa9ea9e556c36836 *man/kegg.target.Rd
794ccc00b1103ee58d0f954dc3e9c4b3 *man/loss.Rd
8e9b1db54ea2ca0aaf4fe19ae88d4afb *man/momentS.Rd
3a8fbeb761aea7e7e944c8ec829e3bd7 *man/optPenalty.LOOCV.Rd
716ff5c60ff8ccdec0943f349a12cadf *man/optPenalty.LOOCVauto.Rd
8fe91e628afccdc91aa419ba8ae78243 *man/optPenalty.aLOOCV.Rd
925489275068380e7c238f67a3f731f3 *man/optPenalty.fused.Rd
55ad2f3569f67a91fdb627116c82502b *man/optPenalty.kCV.Rd
d718dceaaa21e8ad707d04ab2a99acb7 *man/optPenalty.kCVauto.Rd
1c04c060c16575092ef219965a08e5c3 *man/optPenaltyPchordal.Rd
e78429dfedeac6b165f7154e8572e148 *man/pcor.Rd
8ad64aeabce2fde946e4e7d4ee00cc63 *man/plot.ptest.Rd
b3c9d2d1cccba1dda3548d25fa59919a *man/pooledS.Rd
866e1cca054ada12244ca9d8f76683f7 *man/print.optPenaltyFusedGrid.Rd
1d00ce08e5eaedd493c4db902e768bf9 *man/print.ptest.Rd
58c12224a35c87bc1c5ab8e991dcd2fb *man/pruneMatrix.Rd
5433db16fb1d3567c567716293f6a25b *man/rags2ridges-package.Rd
b25e6abac21cd201f3117df64c8d2f26 *man/ridgeP.Rd
14751e12923adabf75c28e8a5bd7a5a4 *man/ridgeP.fused.Rd
8274d995833f44dccd8bd8fa6c905737 *man/ridgePathS.Rd
e9527a74a6f682c40c1dc50791fdb596 *man/ridgePchordal.Rd
f066b92e70a40d4c47a20874e1f31705 *man/ridgePsign.Rd
13c2876787b4aef826a0cc108d43a51c *man/ridgeS.Rd
61ae0c0947f535824700ecc3b54d667a *man/rmvnormal.Rd
2e1d61ab0d7ec4dc02daf1e9e3b66d21 *man/sparsify.Rd
ca6ee3710b7b5f7c95265e05d86d0ede *man/sparsify.fused.Rd
310eb695275b09ef97105d4f91a0a1a5 *man/support4ridgeP.Rd
35c1867478cbdb264751547a3ab51b2e *man/symm.Rd
9bc5aa7d4334d43640f515c9a1fd70bd *src/Makevars
9bc5aa7d4334d43640f515c9a1fd70bd *src/Makevars.win
29e737e7d6f01525b01b0b3c328d8a2c *src/RcppExports.cpp
acb4596109e49feac52105f815116f1f *src/rags2ridges.cpp
840b219510c2a095e160b6fdc1fd1c7e *src/registerDynamicSymbol.c
d478e0aad51221be573cee5fc6cacd0e *src/ridgePchordal.h
9b5628ba22813aab0c9d786f412a9f12 *tests/testthat.R
f5926de26e9a03d680bee2e9f791385c *tests/testthat/reference-values.R
3c03eeae250770a8aa1aee2858690aee *tests/testthat/test-armaRidgeP.R
a42a8950cf203ed9b913687f24f0af39 *tests/testthat/test-armaRidgeP.fused.R
3f2e0fe494e20aaf1a5c6d771ee9f22c *tests/testthat/test-default.penalty.R
0f6a90617dd090bec06908a91bea0988 *tests/testthat/test-fusedUpdateX.R
cac948750b22790aa228e4754848d0e3 *tests/testthat/test-isSymmetricPD.R
88cd0d7535b4f9420c49ccdc47b453ef *tests/testthat/test-pooledS.R
baca779de1b9de159b33a5d4d173b5f1 *tests/testthat/test-xfcvl.R
