Package: dcGOR
Type: Package
Title: an R package tailored to the needs of analysing ontologies and
        annotations on protein domains
Version: 1.0.2
Date: 2014-7-23
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang <hfang@cs.bris.ac.uk>
Depends: R (>= 3.1.0), Matrix, igraph, dnet
Imports: methods
Suggests: foreach, doMC
Description: The 'dcGOR' package is intended to provide the wider bioinformatics community with the use of the dcGO database. The dcGO (http://supfam.org/SUPERFAMILY/dcGO) is a comprehensive domain-centric database for annotating protein domains using a variety of ontologies on functions, phenotypes, diseases and more. With the package, users are expected to easily analyse and visualise domain-centric ontologies and annotations. Supported analyses include but are not limited to: easy access to a wide range of ontologies and their domain-centric annotations; enrichment analysis and visual outputs; semantic similarity between annotated domains from ontology term semantic similarity; random walk with restart upon domain-domain (semantic) networks; and high-performance parallel computing.
URL: http://supfam.org/dcGOR
Collate: 'ClassMethod-dcGOR.r' 'dcDAGannotate.r' 'dcRDataLoader.r'
        'dcEnrichment.r' 'visEnrichment.r' 'dcDAGdomainSim.r'
        'dcRWRpipeline.r' 'dcConverter.r'
License: GPL-2
biocViews: Bioinformatics
Packaged: 2014-07-25 16:16:05 UTC; hfang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-25 18:42:27
