Package: aaMI
Version: 1.0-0
Date: 2005-06-21
Title: Mutual information for protein sequence alignments
Author: Kurt Wollenberg <kurt.wollenberg@gmail.com>
Maintainer: Kurt Wollenberg <kurt.wollenberg@gmail.com>
Depends: R (>= 2.0.0)
Description: This package contains four functions. read.FASTA reads in a 
     FASTA-format alignment file and parses it into a data frame. read.CX reads 
     in a ClustalX .aln-format file and parses it into a data frame. read.Gdoc 
     reads in a GeneDoc .msf-format file and parses it into a data frame. The 
     alignment data frame returned by each of these functions has the sequence 
     IDs as the row names and each site in the alignment is a column in the data 
     frame. The program aaMI calculates the mutual information between each pair 
     of sites (columns) in the protein sequence alignment data frame.
License: GPL version 2 or newer
Packaged: Fri Jun 24 11:43:01 2005; kwollenberg
