5c48984cf9cfd569aff7f0ca61322f40 *DESCRIPTION
2db8dfa2b659059a33570d78cf258bde *NAMESPACE
e6df234f12acc175109659755740bc4f *NEWS.md
da32c1ffc89cdd2386857609abea2900 *R/Metrics.R
920c48a78cfa54fca1e517fba6f0a934 *R/PartitionDistance.R
a5436d4132bc1f98e6e412da46d17aef *R/QuartetDistance.R
b9e8f73f0d62d92190586b1cdf752684 *R/RcppExports.R
6b53cbc209c86ec5927bd57e593ae309 *R/ReleaseQuestions.R
5d4327b07c799e4fa80972855f548b25 *R/ResolvedQuartets.R
64b3258f471f63ff0fabbea71a03be43 *R/TernaryPoints.R
7ca1132e9e83b61a9bb663528c0ea505 *R/TreeManipulation.R
b01a57dd51f587fc4039da74afc77bb9 *R/data.R
3c18e4a6472829ffd5bdabb3c2081f9c *R/tqDist.r
620489fcffcc568816c6da2e37ddbd5f *README.md
0f21235684448ae2f4b56516ec3750b4 *build/partial.rdb
5af9981f89f0b99c5dfee6a60c3bac47 *build/vignette.rds
4610a2fed56c2bbaec42813f44efea7b *data/sq_trees.rda
e6dd75fffa1e3e77be868dcb15966d38 *inst/CITATION
8b4bfa19f14e9b13cacf2295139ba78e *inst/Get_stuck_in.md
efc6db3eabf782e610bd430b9bd620fd *inst/REFERENCES.bib
6cbdbb3556843f8087b241138b5a1990 *inst/doc/Critical-distances.R
5b43457e428ffb5741b7de0a64125b59 *inst/doc/Critical-distances.Rmd
85e88f22637fff9d6dd013070140d2c2 *inst/doc/Critical-distances.pdf
baa53dcb827b7a4ac28fc27d5552f864 *inst/doc/Tree-distance-metrics.R
342cdbd58171c72caa27e31d64f78f6a *inst/doc/Tree-distance-metrics.Rmd
607b1afb9f274973457ef1199789a434 *inst/doc/Tree-distance-metrics.pdf
145fa68e8da376b4a6fb6d129550965f *inst/preamble.tex
a28262dd73c1d461bf12488e636d5568 *man/AllQuartets.Rd
819554f930d160a36e47a823a018f208 *man/CompareQuartets.Rd
7a7e67ab7d64d37ae31ca7a9c073d9f4 *man/CompareSplits.Rd
84e1b9ebff3772337058a32c3b7ab131 *man/Distances.Rd
cd56c5f95d4a52511169bcdfb465ae72 *man/PairSharedQuartetStatus.Rd
272593ffa9b91d56f5007826a1bc843c *man/PairSharedSplitStatus.Rd
e501f9ac12846111a877123cb5daf5a1 *man/PlotQuartet.Rd
7d1805c7a683ec85c8223bc6b638e1a8 *man/QuartetPoints.Rd
61d5bd16f6fa4acf6f623688bb523e9f *man/QuartetState.Rd
297dfe6504491fa0fafe125686e1085a *man/QuartetStatus.Rd
0a7f3ba7970da7347dd6cbb17011d607 *man/ResolvedQuartets.Rd
6077699919c5b636a465ecdc572d33d6 *man/SimilarityMetrics.Rd
e5c50b9c4f29bd342f88ffafe0ba9765 *man/SplitStatus.Rd
1537665a70f47f923a614820028705b0 *man/StatusToMatrix.Rd
08039bf00a04734f407f2ada459d654d *man/SymmetricDifferenceLineEnds.Rd
94893816a0939984328f0baa19bda300 *man/TQDist.Rd
c5309f42d60f54cbbda9267059511012 *man/TQFile.Rd
37f8dad9c3767307062c31f6c83b6c6a *man/UnshiftTree.Rd
5af20e4d48d72d47d54489b47be5dd58 *man/ValidateQuartetFile.Rd
72f0a93a08744feea16dcd7f759f529e *man/sq_trees.Rd
05cf71c0bb384aaadaa679b36ac61afb *man/tqdist_QuartetDistance.Rd
7a1810615a0231f6352b1ea089dbc72b *src/AbstractDistanceCalculator.cpp
e11330ebbd1295da9af918236f64a9bd *src/AbstractDistanceCalculator.h
5a445d40d8efad503bca4a21b2e937cc *src/HDT.cpp
183de2c5f83f773dddf06f9dac69552d *src/HDTCountingCCToC.cpp
41cd6e024e3db8a6c12da91001a3380c *src/HDTCountingCTransform.cpp
d261b94353ad5a05c8ce218fac4b54ce *src/HDTCountingG.cpp
9b555232a6976177cd0e7c214b1a3c4d *src/HDTCountingIGToC.cpp
e7ff1c0cd71dadce5a0ac249131e32e9 *src/HDTCountingLeaf.cpp
e4a750761b5dcf73d88db33936d198f2 *src/HDTFactory.cpp
6b00ab7b0d11b892e535e739d3e1f44f *src/HDTListUtils.cpp
0f01bc4dc27aeb4cefe7b8949477c329 *src/NewickParser.cpp
930586f121489373db40302e2eb791e0 *src/Quartet-init.c
67c0828bf5bedad7a53a8993877e89cd *src/QuartetDistanceCalculator.cpp
8f8aba2c38f2439ffb814fab6498baec *src/QuartetDistanceCalculator.h
7db1b346d8f4ccff1bba9226f4cc13d2 *src/RcppExports.cpp
d5466584aaf8c815a54a8b7aa3f26f7b *src/RootedTree.cpp
2997b46256907d7476283f584c2c2fe0 *src/RootedTreeFactory.cpp
5d0aad726e97548e2c5b10fe6a0b1ef1 *src/TripletDistanceCalculator.cpp
6b7863db62ca71949dd871066822fe2f *src/TripletDistanceCalculator.h
d8c9c57ab3bafe0eda21a30b1750d8df *src/counting_linked_list.h
ebf9c9929a1b3eb80b03ab7535b87a6d *src/counting_linked_list_num_only.h
b007f36805246c239d58471bf9c3d0e3 *src/hdt.h
e947704ae36b3fe86509311137e433c4 *src/hdt_factory.h
0a869dc1a9de30b7d398b26ea7de412f *src/int_stuff.cpp
4ea9b7569fd5eb9673d05647a02c8cdb *src/int_stuff.h
770a5874ce678207b32a85686b9ac27f *src/memory_allocator.h
f8bfc24b9db844f94776f322530a5d80 *src/newick_parser.h
ce775ecb23b0a9f1eaef305593426685 *src/quartet_calc.h
0b9b4110b08ce782e2eb643968b46bb3 *src/rQuartetDist.cpp
3162e4ae408806a2274a4acb55b5f6ac *src/rTripletDist.cpp
bfb78b07911799ac87097c3a02b2f832 *src/rooted_tree.h
09e9e5bf70fde2212aa83d74a1d14f2f *src/rooted_tree_factory.h
36376e6d90437cf1768d906ae187f9ba *src/templated_linked_list.h
b4f38b2477748217cb03d7ceaf8006a7 *src/triplet_calc.h
b7a87712f0d56e781c85452459041cbd *src/unrooted_tree.h
9f004e030d7afdc841db44bbaebc1402 *src/util.h
75caacb6bd6608083128ba6db16b6692 *tests/testthat.R
f018d0fba7d0975ee1a21f78548def70 *tests/testthat/test-1-tqdist.R
bb252acedb92bacada80b19430eceab5 *tests/testthat/test-PartitionDistance.R
354c248f21a2d8db9702cb03a2bc844b *tests/testthat/test-QuartetDistance.R
df1955c1b64603f4103e7ac000c6bde4 *tests/testthat/test-ResolvedQuartets.R
9799251c2f93b764fd789a361bcecc42 *tests/testthat/test-TernaryPoints.R
1b9e9ac2d525321f0003957d0ce258c2 *tests/testthat/test-ZZZ-Metrics.R
8cd8d2957f7076b88e668e5cbd30462b *tests/trees/all_quartets.new
c77e7e425ce61ad6f4794aa761a96b58 *tests/trees/five_trees.new
866430511e1922de3d699d2bc8d4312f *tests/trees/none.new
27fcf4d2ce88d537dfc7123af31bd851 *tests/trees/one_quartet_twice.new
b149fb81dd30a3ca2c912a05a735af61 *tests/trees/quartet1.new
1dca61cfcdee4fe1b6bdbd31dbdf302b *tests/trees/quartet2.new
a459cbb218d1a152e7b4b61593781063 *tests/trees/quartet_unresolved.new
94c503ebf10649687ebe687dc809e755 *tests/trees/test_tree1.new
72fab1d3604a4bb1bcaf30828a198bb8 *tests/trees/test_tree2.new
70ba65b7a40de93c0b14b7efa0eb0d31 *tests/trees/test_tree3.new
a33e2325f0f8362f37098fd0cfccdf69 *tests/trees/test_tree4.new
5c9b0117aabf90e69f83dfa6caa0b662 *tests/trees/tree_ab-c.new
24c6536d3c734d1ad27d098177e89376 *tests/trees/tree_ac-b.new
453fc4a3acddba283e8f4630145835a6 *tests/trees/two_quartets.new
68aa19327a16788844c103ccdb30b5c3 *tests/trees/two_trees.new
9a6eaab8ddeca800b66b85a3ed869d6a *tests/trees/unresolved1.new
69374825cf9444769488fb0f2817c357 *tests/trees/unresolved2.new
a546a5f909b41a448e80f09a63b8d010 *tests/trees/unresolved_list.new
5b43457e428ffb5741b7de0a64125b59 *vignettes/Critical-distances.Rmd
342cdbd58171c72caa27e31d64f78f6a *vignettes/Tree-distance-metrics.Rmd
