cb476634177118fdc16bfce39f5ece60 *DESCRIPTION
6a13a9a444ca1123dcc5c5a7fc5c2c1f *NAMESPACE
9083446b9cadaaea59dd557141b219d9 *R/marginalRecon.R
365b44dd58f8c674cde39773f492a957 *R/modelAdequacy.R
dafcb4cfc88297e5f41ffd4f64a70512 *R/plot.R
7fa8ae92ca862ba569a215b11092f772 *R/selac.R
f00e44cecd0e226eeed7c0b61abcdbca *R/selacSim.R
d1b901179038b3d6da554e11368731c4 *R/selon.R
32b255f8c46edba90af879b54f7c52f5 *README.md
1993c47d726bb94219049559a1ecbc07 *data/archosaurs.rda
0e3b69c532b117a4ef22891c2ff9b3a5 *data/yeast.rda
3fac14ea35a20317e02fd55e689fe5e3 *inst/extdata/gene1Yeast.fasta
6a081857f78209f7d50698336e52ad7c *inst/extdata/rokasYeast.tre
8ec0bd66bb9b710b148f1a30f2d4b5b2 *man/GetAdequateManyReps.Rd
7ca18168db09fcbbb0171dca8fdd2019 *man/GetAdequateSelac.Rd
3e25f0a509deebe8a67830ee101f3edb *man/GetFunctionality.Rd
dacb43890d9373641985708734b341ad *man/GetMarginalAllGenes.Rd
630fb2f9dd530d34a9d05b5ba2e576df *man/GetPartitionOrder.Rd
50e94d628e8283307939c9e92603d5c9 *man/GetSelacPhiCat.Rd
b5a8b7a480800d6a64e0897952f7ef31 *man/GetSelacSiteLikelihoods.Rd
2d2bd83246aa940b51677998ba5d4256 *man/NucSimulator.Rd
cb0a6af201cbb67c3facac16ea645b15 *man/PlotEquilbriumCodonDistribution.Rd
68db23743acf2823e3ac51ec71f87109 *man/PlotExpectedFitness.Rd
afac3851dc0e867ce4d9d679b784b66e *man/PlotGeneSiteInfo.Rd
3bf7190b73a5aa9074972aca3d0c134b *man/PlotMutationFitnessSpectra.Rd
88b3a96fe5cb201d5411b6d3db853495 *man/PlotPerAAFitness.Rd
bddd712b668884a94e6b2bb68285452a *man/SelacOptimize.Rd
bff789cbef13a53598aef968d1e7f274 *man/SelacSimulator.Rd
66eba98172ca4ddd780a9c84c5c991fc *man/SelacSimulatorEvolvingRates.Rd
afe1e7f7fcb0a7adfa57a836db54257d *man/SelonOptimize.Rd
58dd1f6379cfa68b9f9c958bd680c189 *man/SelonSimulator.Rd
c44350a56a1b51e6810812b916c23a72 *man/archosaur.Rd
9d6b6e75eddcb7815cf82eeeff19a9b5 *man/internal.Rd
28c85c64ef30032f150eaf079346abc2 *man/yeast.Rd
fb0b77fc2982ac935ad2b36d1fe98854 *tests/testthat.R
3fac14ea35a20317e02fd55e689fe5e3 *tests/testthat/gene1Yeast.fasta
6a081857f78209f7d50698336e52ad7c *tests/testthat/rokasYeast.tre
ca1f006295b55d92293aa1987130afd0 *tests/testthat/test_likelihood.R
5fc26413eec64584adb180ff85208892 *tests/testthat/test_utility.R
