b8eeca52a554a4792470825790a382ae *DESCRIPTION
5a6b3cadd19da9dfd01c615bb07ab72f *LICENSE
d124807994703f9feefc96dc47ee3288 *NAMESPACE
c71a2f1963dda1108d1e4bc47c958a0b *NEWS.md
f0402cd2852ee7abfeec9f275d15a660 *R/collapse_snps_by_gene.R
7fd2d4fbff47db234f4f18a2e5124903 *R/data.R
402f322ec27bbb3e4ff72ee2b305786d *R/dup_snps_in_overlapping_genes.R
fa8b060b10e9924e39ba24bf76e85912 *R/format_inputs.R
4a60a88c68b6c30e0bad12cab095d961 *R/generate_allele_matrix.R
7f9596505762af280c96237b7c776a2d *R/preprocess_tree_and_vcf.R
2798b6b07634cbf0ed54e58750cc10eb *R/prewas.R
720bc95ce36b41bd37fee1e03569772c *R/reference_alleles.R
010fc7af2aee70081d6a9105a4753d3b *R/split_multiallelic_snps.R
5f287e6169ce7f6245990125511c5cd5 *R/validate.R
3de42973cc3412665300a923f524f6b3 *README.md
e4fc324f664e7399a78d04d3b7e74d0f *build/vignette.rds
adcfd0f301d315e72426fba777a23f39 *data/gff.rda
16526b2808a76981fae49a1388171fbe *data/outgroup.rda
6bcf4a0f8c300883f1051e53c43d6ec6 *data/results.rda
f756693dbb9e633851963c8a9e1890ef *data/snpeff_vcf.rda
b4dc0fa899ed4cad9ac48e29eef8b572 *data/tree.rda
231ab84bffdd9d3c5ed3f40e3e0b5466 *data/vcf.rda
c607db87c31cdc7f75346b5a0abed9d9 *inst/CITATION
69c9a6cf772c0725565079a09ea1e421 *inst/doc/getting_started_with_prewas.R
13dc837732abdd8d56e71ca39aaa4d0f *inst/doc/getting_started_with_prewas.Rmd
b0762718d1cb0b0b3aa8f656ed66361c *inst/doc/getting_started_with_prewas.html
c14b910e4e69b0bd58b847dfe2179af7 *man/collapse_snps_into_genes.Rd
ea302210c5144e46b1e327fe9b22e37e *man/collapse_snps_into_genes_by_impact.Rd
85b60db98c3bb2ac30561bd8aff85b74 *man/gff.Rd
491c09a8fd8e2adca49fce5ec4921324 *man/outgroup.Rd
74dece25267aff1a1ea8fdce24ba0002 *man/prewas.Rd
24bf880c363ad48dee18a77c3486e884 *man/results.Rd
d6ed5918c0202fa688bb738c557b0ee9 *man/snpeff_vcf.Rd
ff20710d546bc0bc655160cb61f7809b *man/tree.Rd
7987ebf45cc1a6346c112b707cca7b1a *man/vcf.Rd
2ffa9550eb9d25e4d38304394b7576b6 *tests/testthat.R
2b0609dc55994557b05c5e81e42f299d *tests/testthat/test-collapse_snps_by_gene.R
f709ef981c7a03b6c688ac7a7a985456 *tests/testthat/test-dup_snps_in_overlapping_genes.R
14b6c942b2d9b5661c6c8e8f1f8774c4 *tests/testthat/test-format_inputs.R
101dd874b2a0e65a9ccde732a599734b *tests/testthat/test-generate_allele_matrix.R
59f9210442d60f4ba351ef6ad9afbfdd *tests/testthat/test-preprocess_tree_and_vcf.R
7ff7b537a9376fc8f5981bc7e626ec6d *tests/testthat/test-prewas.R
ff979ec931be89e2c501d13687b64081 *tests/testthat/test-reference_alleles.R
331f5215f388039af696b84befa2a067 *tests/testthat/test-split_multiallelic_snps.R
5de945ed259b274a5c13946aee2f9be7 *tests/testthat/test-validate.R
f00a9aa70c2e46e5408ed8b6d8adb8d0 *vignettes/Figure_1.png
20f632036cda214dfdb205bafd65eb8b *vignettes/Figure_S1.png
ef8085f23f7e7e29e82a1b9c8922bbfa *vignettes/Figure_S3.png
13dc837732abdd8d56e71ca39aaa4d0f *vignettes/getting_started_with_prewas.Rmd
