Encoding: UTF-8
Package: geneExpressionFromGEO
Title: Retrieves Gene Expression Dataset and Gene Symbols from GEO Code
Version: 0.8
Authors@R: person("Davide", "Chicco", email = "davidechicco@davidechicco.it", comment = c(ORCID = "0000-0001-9655-7142"),
                  role = c("aut", "cre"))
Description: A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optionally) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293,  GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>. More information can be found in the following manuscript: Davide Chicco, "geneExpressionFromGEO: an R package to facilitate data reading from Gene Expression Omnibus (GEO)". Microarray Data Analysis, Methods in Molecular Biology, volume 2401, Springer Protocols, New York City, New York, USA, 2021. In press.
BugReports: https://github.com/davidechicco/geneExpressionFromGEO/issues
Depends: R (>= 3.1.0)
License: GPL-3
URL: https://github.com/davidechicco/geneExpressionFromGEO
Imports: BiocManager, xml2, Biobase, annotate, GEOquery, markdown,
        R.utils
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-11-05 13:08:56 UTC; dave
Author: Davide Chicco [aut, cre] (<https://orcid.org/0000-0001-9655-7142>)
Maintainer: Davide Chicco <davidechicco@davidechicco.it>
Repository: CRAN
Date/Publication: 2021-11-07 00:30:02 UTC
