299762d41fa4f80bb04924240a601e43 *DESCRIPTION
c4a70960c23d08073ff3c3bdbf9cd004 *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS.md
eae6412c088e1842391fd41c7e077666 *R/Cape.R
e85085a1dac12982ff09e835c3aa0f92 *R/bin_curve.R
5daa5893d55200598b44060474b2e6c3 *R/bin_vector.R
5f48c0cda2852ad2bf4d36ba79470eb5 *R/calc_delta_errors.R
6ccea26ee0ebacf9c8bb04f83d7f7fe2 *R/calc_emp_p.R
50983fecda6a8386284d90aeaf2d2b2b *R/calc_m.R
bb72e40f17f818aff87a0068e47de213 *R/calc_p.R
be7c0cb0de63789799e07424e8cd4fea *R/cape2mpp.R
25d6ab8cad1045431f295fd7e7f48caa *R/center_std.R
d6c05065c7ec179c6b832cef407a3e59 *R/check_bad_markers.R
5b3a4f93fe5aa22fc73aeb8b6a4e6296 *R/check_communities.R
e2cce3c9505c694389775fb6dcf5b091 *R/check_geno.R
bc359c07c33004d75cf4e292fe608389 *R/check_underscore.R
8fa33cbf9a68ad3cb19f666bd10c1020 *R/chunkV.R
94e79e82b655825f87f2ea93a75538bf *R/colors_from_values.R
6fb96892a28eb6b69e6904caf3b36166 *R/compare_markers.R
d5ccb5002491aa85b7c7d5d2331197c7 *R/consec_pairs.R
310e454af5d6d6ac14213902b7198817 *R/delete_underscore.R
311cc48036c501d6daf56b48eaa1367c *R/direct_influence.R
50d9d39f7592e3b7645c9b941c080edb *R/draw_pie.R
cf8e927a2b35cc8cc779d9751bbde735 *R/error_prop.R
b949da985be8269be2fb5d0cd5374db3 *R/exp_color_fun.R
af0908aacaa7c500966ae2dc29b1b2c5 *R/flatten_array.R
94ca12e6fc1122a2f3af335fcc58e690 *R/genome_wide_threshold_1D.R
bd3ade997e69a4bd11062cdb2c2e6d6e *R/get_allele_colors.R
998c0994ad649947d4bf7f3ee794be59 *R/get_block_allele.R
258a0a6ce7986efc01f9fd7340a14ae8 *R/get_circle.R
80642679864207349e21963f25951fba *R/get_col_num.R
51c695ed0499af520f6629948e48fadc *R/get_color.R
e6dffe2704f18620859955292b2a0952 *R/get_color2.R
3a840bf71d675a3c307fa7d79424e4cb *R/get_concent_circ.R
2ac446e9da66fb6534093ad28fc1e82d *R/get_covar.R
149e6d6071c7101a6072ac768613b3b9 *R/get_eigentraits.R
3a40a6419daec55ac426bfc53bf0f888 *R/get_geno.R
59ad69a444cd6d3ea05e6c7d050b2157 *R/get_geno_dim.R
85c8fe8468e0f9bc351d0cea0ce1acd2 *R/get_geno_with_covar.R
506ce6c4a81b1e0f2f8a65e0c85a6f7b *R/get_interaction_error.R
15ffd1dd441c2e4842fe9030daae0cb6 *R/get_layout_mat.R
b7426dc755719f729b146a6fde3bfe03 *R/get_line.R
60f91f85be5ddb07b017de09a6f0e4b9 *R/get_linearly_independent.R
88933d56596f0dcdd175ef4a58087eb9 *R/get_marker_chr.R
3d87092657de18477c8705112dff986b *R/get_marker_covar.R
0253d365bfab6024a64e48980767ec59 *R/get_marker_idx.R
73ff3a75cb1a4c4fcac620d851c31e25 *R/get_marker_location.R
747028c5a17f3745c90bdf67024dd42a *R/get_marker_name.R
4ea8470a8907b3c539ef460e482a8a47 *R/get_marker_num.R
4225cca1c5d1891b411055375d2d8d6f *R/get_network.R
ddf1fcd591fa83a359e25e3140cd889a *R/get_pairs_for_pairscan.R
a6be03ada24294b1ebe6c169818b1850 *R/get_pheno.R
dbe4affd7eab4d8177205fddec0ab9e6 *R/get_stats_multiallele.R
a4abee4c9c29271391bab420060f7fbc *R/hist_pheno.R
77da74b8b934e19f7e51e6c0a6ef50a3 *R/image_with_text.R
ecd4b1001cbfc3b83039c06fabd1d684 *R/impute_missing_geno.R
7cc4d1da7510c30511ec6664b03433c4 *R/kin_adjust.R
b5a237363260e389d9b7268b99cd890a *R/kinship.R
4ec88206084ea5ebac97a5c9608583a0 *R/linkage_blocks_network.R
ccf89e02a878df1b5dfb85a756d2e1db *R/load_input_and_run_cape.R
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3e13ec19525c1d65bf2b995161c22904 *R/my_image_plot.R
6d430c6b9caefd8874cb5f19157d697a *R/norm_pheno.R
7fb8c9a665f886f7fa561ee1b2f227bc *R/one_pairscan_parallel.R
d82e777e47506f83626d289438ba890e *R/one_singlescanDO.R
c6c3d5426fbaeeab3baff8a4baf4fcba *R/pair_matrix.R
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4e49ca7a8fd1b36d15fdc4bf0c846ca4 *R/pairscan_noKin.R
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3bab793cb9238577ca4f5e9e441bfa14 *R/plot_trait_circ.R
db51e6e0176b42bb71520d268dd4affa *R/plot_variant_influences.R
cdbe2fe18d4e730599144571a901ecd6 *R/qnorm_pheno.R
2f1603fce3ebc8c712dbd3018e9d49e9 *R/qtl2_to_cape.R
2dfef1018ffe415e3cd403f49286e994 *R/read_parameters.R
3c8185dcd6472d41934dd3bbf368ac43 *R/read_population.R
396f76621ce678ae09bbf8e2fb9ae68a *R/remove_ind.R
61b640efab9c4f52c2ddc07c636759c8 *R/remove_kin_ind.R
d13a31b1404195e1cdf6a8f6051cdca8 *R/remove_markers.R
89b97142928ced5132d2e380ab7da124 *R/remove_missing_genotype_data.R
cc7bea7e2291d56b90d962a6b506047a *R/remove_unused_markers.R
318479fe591501db36f0b679a02dc8db *R/report_progress.R
930aad89902d5a224cd015241c57fe62 *R/rotate_mat.R
1998eb11b76dbf6590b09e18fd553fc6 *R/run_cape.R
2c8aeb5e9770723fd55d26d1deffbc0f *R/rz_transform.R
a0056407848bbd4ec18a748faee0512f *R/segment_region.R
638a2ba3af5a7b3d0c7a9b29258e0b71 *R/select_eigentraits.R
e900287a0543ef8a5dbea2a0edb0d711 *R/select_markers_for_pairscan.R
35fac6aa13080894e8d86a7181551fc7 *R/select_pheno.R
d4022f668e81ce210ba524347022beb1 *R/singlescan.R
83f77137a4edd2bfd85d04d54da47f1b *R/sort_by_then_by.R
1b42042ff5d12c3c5cdb981e51fdd2c6 *R/write_population.R
5448f44c8569ca02c18ea3040c40f930 *R/write_variant_influences.R
8e6b49c010c6e145c4bf8e80609555d2 *README.md
fa3590d9645ad9b959ed72a3381b1096 *build/vignette.rds
6f25a87bafc2b5f3edf1938b678e31d8 *demo/00Index
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24065346a4a253d60bf2849142abe0b3 *man/calc_m.Rd
6ee1f0a3035a2ba890f84af83cd46452 *man/calc_p.Rd
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40477528cd824e10826a396b7b5f2c41 *man/direct_influence.Rd
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462899154ada9a21928b605c9a49e8f7 *man/get_allele_colors.Rd
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41e90b8f160e49947460ebfd5fa6d4aa *man/kin_adjust.Rd
104668d173b0aa80dba0a14c6fadcd1b *man/kinship.Rd
6227b096a59b77c61d3f2ceb6a4a50b4 *man/linkage_blocks_network.Rd
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