23d2368a9aa3ece044e3f541188514a6 *DESCRIPTION
6c6fd733b2a33303253a3324cb778862 *NAMESPACE
6acbfae966a7bfa53bf9e1b9893d0a2b *R/BICompare.R
4900f55b40fdd4409a6d4a730c6a936f *R/CreateBioGeoB_Object_subclade.R
125ad4f3406177789ba8fa2ae9482912 *R/CreateGeoObject.R
f19f97b5e988da2df68338fd9876100d *R/CreateGeoObject_BioGeoBEARS.R
af08bf4feb7799b54ccc73f52bd888b8 *R/DDexp.rescale.R
05a17e2d443df9c89c6f10aa7ea47852 *R/DDexp.rescale.geog.R
35b80ac62c4a096a0c59c5942faf74e5 *R/DDexp_geo_ADiag.R
a4521c50fdcd4655c2ea0f1ec1567bc9 *R/DDexp_nogeo_ADiag.R
9dd75fe2ae09753657bc8e845e33da43 *R/DDlin.rescale.R
e6af86c43b4a99054cef04fe4e444b0c *R/DDlin.rescale.geog.R
63a951df8b834dcdefca882234041085 *R/DDlin_geo_ADiag.R
0327ef7b8cf091bf2b4c12dc1d84bd4e *R/DDlin_nogeo_ADiag.R
84f19a9d0c4e44fb78e64e8ab066e9f6 *R/JSDtree.R
5bf565a704551cc52293af2386ab306b *R/JSDtree_cluster.R
d1a85b17809f93c4bc835874db8ba31c *R/MC.rescale.R
d2fe378689e28557a2d9cf9075d8d9b2 *R/MC.rescale_geog.R
268539d58227d9af2d25509aae9202db *R/MC_geo_PM.R
b2c96b3d4e6bf0295d0f2a8586c620fa *R/MC_nogeo_ADiag.R
ae5d5f82231c7dce84b4bbc78f4432ac *R/PhenotypicModel.class.R
c4a2f67b579002675cc4a5a44e2e9e46 *R/Phi.R
3d1ea2baa9f284f4fec94581cc6ad6ac *R/Psi.R
306f4607d31dbe30a3b3d754eb20d244 *R/base_sgd.R
db73a57669567068541e5a76fb315e17 *R/createModel.R
c22c481a4c351aedcfb70c046177705a *R/event_txt_into_events_row.R
6cb49709bcd5b5b8955ef58e2bd2a556 *R/events_txt_into_events_table.R
b25432cbdd6f28e737d98c22c77c7047 *R/events_txt_list_into_events_table.R
1c9d013962287e796f6936718a4d06d6 *R/fitTipData.R
fa01d5361511d6bfa705e27781a55bbc *R/fit_bd.R
7117cf2145f8d63a6e17b0d19c0e0aec *R/fit_coal_cst.R
b8bb60aec95ea5640f23ee747a801d2b *R/fit_coal_var.R
68248829215654986b2b044cf0cc79da *R/fit_env.R
c0e04be86e53f1ad4447e1082ab82bb4 *R/fit_sgd.R
149663074531debb4a2074d445e4a64b *R/fit_t_comp.R
f3af589b6ec67273e42cd075791cf6e2 *R/fit_t_env.R
19eeafd9d39dafa7616c04d40bf3d75d *R/getDataLikelihood.R
4eb5702427a8c6f3e38f6a50481f341e *R/getTipDistribution.R
56867e40d6f023820f709d445cd861e4 *R/integrate.R
f9e529b5ec78defae66c8c9ea8714221 *R/likelihood_bd.R
1fdfd4057e6e4c0394bfc37d5e3b8318 *R/likelihood_coal_cst.R
97702cf15506ba337c79aee355fd4d91 *R/likelihood_coal_cst_mod.R
c093daac9626b39be3ca89d17422018c *R/likelihood_coal_exp_mod.R
939b14961eac07c4e420f2f8ba5dc47f *R/likelihood_coal_var.R
efc70cf7e97c0e858e4b0f28b92d1306 *R/likelihood_sgd.R
2edaac105fec59d62f1146e6b6dd01d9 *R/likelihood_t_DD.R
f446ca3dbbe2ca433538f33f6e289f89 *R/likelihood_t_DD_geog.R
d083bd9d0ac8ba4a92a73c4d2334330f *R/likelihood_t_MC.R
e08efbb0303b483022d3eb10f18ed221 *R/likelihood_t_MC_geog.R
573a52d7b147df9c199ec804d3039ece *R/likelihood_t_env.R
0f91f068389d6ac025b3f024a1db1e09 *R/modelSelection.R
c4f64c58bbf7f195bd22c406bba37e2b *R/plot.fit_t.env.r
baec2f80828bcfa98fc138a0c4023cd7 *R/plot_BICompare.R
eeec66c3618f53416ed78e29af6ba90a *R/plot_dtt.R
e1b1e7f3be6c6a4940367e7e1661a9d6 *R/plot_fit_bd.R
1e41df3dd9bbe66fb41a0f3b58d21c6d *R/plot_fit_env.R
aae3c96d3d7e89a6a175a51e12f462d7 *R/plot_spectR.R
e6992a5435075fa0f04ef73d965154b7 *R/print.fit.bd.R
e3c208749c52727e539c52c7f25e8f92 *R/print.fit.env.R
bbfe811102fe81578e3ba31e097470ad *R/print.fit_t.env.R
d59452a25b11edb9b064032748228eef *R/resortGeoObject.R
5546fac46c467f90e968030a3629acee *R/sim.convergence.geo.R
cd7e507595fa9fd6c62fa2221efe19bf *R/sim.divergence.geo.R
0add8eacf65f899d0652ace486f37a0f *R/sim_sgd.R
68833acf2b1bc103544d5a4e390785d7 *R/sim_t_comp.R
2294c7efd93093e9735ef1f8d33fd6b9 *R/sim_t_env.R
b07c7aa23531002efd1462e783effae3 *R/simulateTipData.R
cb403c1aa73d669ca69e53b8ba1265ae *R/spectR.R
290c89ef86637c7b1baba5b2a8642d8b *R/stratified_BGB_to_tables.R
4483227f582310b0f3976e5b05cc027d *README.md
d95ed2ed975ef9a85a4e061085b56aeb *data/Anolis.data.rda
bea072a0086ddb231bde6bd83a5bb398 *data/BGB.examples.rda
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2f188f3ddc8f2b94da963b8094a9baeb *data/Calomys.rda
c6bf2224f884a43b84a877440b61e3f9 *data/Cetacea.rda
7129d2cab2428a26b0704f4a24d0d7ed *data/InfTemp.rda
291d2744e58ad57d66c80c01565aa256 *data/Phocoenidae.rda
55e106a18928f19ceaca3da8e7392830 *data/Phyllostomidae.rda
22a7928e0d562ae4e3b026628d871aec *data/Phyllostomidae_genera.rda
130bfb416eb5b4c70faa575183381734 *inst/CITATION
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9471e6cb46d5f3efa5d4a9845fa054fd *man/CreateGeoObject.Rd
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67078d0e5dfe4989bb429ccc46808719 *man/InfTemp.Rd
e5a2569635314fcea24caf76f968f885 *man/JSDtree.Rd
b8d39096343e1555d5d4bbc15825192e *man/JSDtree_cluster.Rd
ca14d3c0428cb99b4d3aa364e132530d *man/PhenotypicACDC-class.Rd
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7378a8beeecf731a6f6dac626a78b2fb *man/PhenotypicOU-class.Rd
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05487bef9337a0add225f8df17d64592 *man/Phocoenidae.Rd
202e18392532a4da4cc56814f0cf913a *man/Phyllostomidae.Rd
da5d184254d121be4ede02104112ed1a *man/Phyllostomidae_genera.Rd
1f29434075c6516a1976702d8e14699d *man/RPANDA-package.Rd
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4ef88425d9fcece9f2eb4479c230fb1a *man/createModelCoevolution.Rd
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eb24e38f8c37d9885a67cf17d3f0589d *man/plot_BICompare.Rd
1425385ac0807b36bdbf0d824632d516 *man/plot_dtt.Rd
080223618337d716a89d1dadf4436f7f *man/plot_fit_bd.Rd
592b55f33745711f2b55816940d2d56e *man/plot_fit_env.Rd
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68257e8de7384e9293d0ad30305faf82 *man/sim.convergence.geo.Rd
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cf962f1547f819d175a5ea26f5600709 *man/spectR.Rd
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393d53ecefefb035bd040544051dc8e2 *tests/testthat/test-fit-env-bd.r
