6db8b61d0dbff9a14f4ac09e23070019 *DESCRIPTION
773399c3d961b99d9815d4616fa05b8e *NAMESPACE
a87b65ecce37dba16941889e6f5a1278 *R/Functions.R
a38d84911a3ddb9e48bc0d191ba28651 *R/REIDS.R
7b7cad5b04d28a47d57d3d42d384dce8 *R/data.R
198bb83c890e524150c41bfdb4621da7 *build/vignette.rds
958e337bd370007e44f99b05826290fa *data/ExampleFirmaOutput.RData
dfb8144eddca7f6cb551ba342be2b157 *data/TC12000010.RData
f5f088378835944cbed5a634e2a24e95 *data/TC12000010_ExonLevel.RData
add1c4265b01318306a53ad7f6235337 *data/TC12000010_GeneLevel.RData
5a5b6a3e28fa97506a5686da05356115 *data/TC12000010_REIDS_Output.RData
2777d2d6b17b78308b8d5b1cf59501de *data/TC12000010_positions.RData
2bf344b37ccfb11772a309a6e29a0f9b *data/TC12000010_transcript.clusters.RData
15538f5e14dc27e82028d2351d3ae3c1 *data/TC1500264.RData
b007be65cbd8a7fbf3237bcfe623c64b *data/datalist
7d4b5e10ddaf4e7d0bc47545a5053b25 *inst/doc/ASExons.pbs
345f0d6f6f28181c01b18482dca154b7 *inst/doc/CreateOutput.pbs
d3d1d04ef5a2b313250e6bfb12d45232 *inst/doc/DataProcessing.pbs
90d2f9d7cfb491abb2454c0bbea3f95d *inst/doc/ExonAndTranscriptAnnotations.py
e49f8902b5f22c79b658f7bd23cfe571 *inst/doc/FIRMAScores.pbs
15d8cc32afb3114c51c86bfdff60ad75 *inst/doc/ID_Name_TC.py
bab0d8f2c0b0795116a715f44da62c89 *inst/doc/JunctionAssociations.py
c3fb895718a86dece099dc595dd1ae56 *inst/doc/Line_Indexer_PivotFile.pbs
2387b6ceab702c2f975706459713b52a *inst/doc/Line_Indexer_PivotFile.py
aa7703fb653ba9bad97b575844257fa5 *inst/doc/README.txt
7dea574b22fa5b736f8ab89c2b85bd16 *inst/doc/REIDSFunction_HPCVersion.R
5ffe0232bfd668cd68043bfee36f32ad *inst/doc/REIDSFunction_HPCVersion.pbs
e044b77e4046f81a905ba56e1a8db6e6 *inst/doc/REIDSJunctionAssesment_HPCVersion.R
57a8e74b7959bf67b752924ae3dafc66 *inst/doc/REIDSJunctionAssesment_HPCVersion.pbs
b55db6d542997aace8ec95d9b7f0d334 *inst/doc/REIDS_Vignette.R
80376d30d0e735d18d226aaae9894f6b *inst/doc/REIDS_Vignette.Rnw
87fc4c5863feda3bc25f7e3c5cd4544a *inst/doc/REIDS_Vignette.pdf
bb4a9ce689540487bf651920752f71c8 *inst/doc/REMAP_ExtractInfo.pbs
d27e3384a693f116da2b8d77b773eb8c *inst/doc/REMAP_ExtractInfo.py
e69789063dec95296db447b610047372 *inst/doc/SpliceIndex.pbs
03ccf4206f2af51cdd9d2e87eb9a3195 *inst/doc/TC1500264_LineIndex.csv
63206fee74871d156a257e9344b2ca20 *inst/doc/TC1500264_Pivot.csv
4e7493849719e2184351f74d0038bf92 *inst/doc/TC1500264_REMAP.txt
8e3c23a3752691a3843445239eaa7d11 *inst/doc/TC1500264_REMAP_Indices.txt
3fdd1d5eed934049ed72ea187e8da350 *inst/doc/TC1500264_TC_Gene_SplitFile.txt
e0d5e4623a61fac229c8837cfbe6c024 *inst/doc/addGeneId_2.pl
b5077f6e4ffa8afc18baf39b6724be78 *inst/doc/combineProbeInfo.pl
2f3dde49beb27c879ed75744df12d826 *man/ASExons.Rd
ea2bfca4d68c06560ec9252892286a58 *man/AnnotateGeneSymbol.Rd
3bf384cdff4b0bb015874ed796580535 *man/AnnotateGenes.Rd
2fd917aa095fc69162c67dff83b23276 *man/CreateOutput.Rd
dfb522b86de08ba69b1ced32fb70dafd *man/DataProcessing.Rd
72b025f3983ac4ee11c5ebd03777b866 *man/ExampleFirmaOutput.Rd
205cc23cffdbf61f99f1fe0aa57cf795 *man/ExonTesting.Rd
f0cc413f0a3d35630a7be6488cc0aea0 *man/ExpressionLevelPlot.Rd
e27cab29b58e17e12a42d8988a3dd4d8 *man/FIRMAScores.Rd
64d261c8b8de5d19a54fe1220d389afd *man/GetIntensities.Rd
7e2332ecae0431fb24fb7b67ad117d65 *man/JunInfo.Rd
60bbedf8a68fe39271914ec1b86b1cb0 *man/PivotTransformData.Rd
5c27b9a2f46d58c21d69b5c1392faa29 *man/REIDS.Rd
502b892a8807a1c535c141cb7fe26563 *man/REIDSFunction.Rd
c4da92702541d254a0833898116a08f2 *man/REIDSFunction_HPCVersion.Rd
0ffdada3856825c5b8fc06bd32355997 *man/REIDSJunctionAssessment_HPCVersion.Rd
0ed3d2afc7df1d30687c077e202ff23a *man/REIDS_Analysis.Rd
f63a2058dcf2936dd87dd928ada1a402 *man/REIDS_IsoformAssesment.Rd
88118cb79794d671643a4a384b8fb1e0 *man/REIDS_JunctionAssesment.Rd
f1ab996fe21b5110d1591a533690ca07 *man/REIDSmodel_intern.Rd
5ebc63b6ec0f3b70d75205f3caf8b0b8 *man/REMAP_SplitProbeSets.Rd
2436fb891139f899f9b3bc2296eb4133 *man/SpliceIndex.Rd
8780226d4122213a375f2997cc3123c4 *man/TC12000010.Rd
b148b2ad5dd2e81c6412388513880279 *man/TC12000010_ExonLevel.Rd
4c84d91e4cbdabe5d86295e3c585042f *man/TC12000010_GeneLevel.Rd
40a3e00a7faa6897a513669c308b0b24 *man/TC12000010_REIDS_Output.Rd
bef7c590fbf1e085efb0054e13dfb065 *man/TC12000010_positions.Rd
105a11e779474dcb720dc750f8a17298 *man/TC12000010_transcript.clusters.Rd
4b87713538758572caa17223a8941e58 *man/TC1500264.Rd
01789044cef004df6aa8a60909bf91eb *man/TranscriptsPlot.Rd
cfffc854b0710e03ba581ea96ab0f5fd *man/above_below.Rd
21364d47818900913f07b4f2e6497a99 *man/arc_radius_locs.Rd
0f14f38b043a9d5f03a75ff7303e3611 *man/arcplot.Rd
c4448cef6156dc6e85c35f5f0e844529 *man/graph_info.Rd
a1e5b10a897674853458ebfab9288cb2 *man/iniREIDS.Rd
e3e0128bb8bdd53814d17e4de245a1eb *man/min_max_margin.Rd
2232fba22543f7b0a1b291bb60afc5c9 *man/node_coords.Rd
754212b2b79db0ce581cb77f2e729358 *man/reidsfunction_genebygene.Rd
e973d703fad9940a7717cb39f3e45221 *man/trim.Rd
6c792a178d055e508a14a0285d7628ae *man/xynodes.Rd
a5c8f85b14a36ab680212a5ac73211df *vignettes/Figure11.jpg
e5dfd999402f5d1e3d5968666874a7cd *vignettes/FolderStructure.png
85b75ddf17d7d0dcc1ac8f03c9dbdef4 *vignettes/Package_1.pdf
d4f68f3abc3e110a01be391d28a71e59 *vignettes/REIDS_Biblio.bib
80376d30d0e735d18d226aaae9894f6b *vignettes/REIDS_Vignette.Rnw
195c6d5c455298ed385d3d1565d70662 *vignettes/Transcripts_PSR150.pdf
c3c7f26c2e84a1eecfb3ec0c0b37159d *vignettes/asa.bst
