9f05ce8eb44e56b295830d82abf8cffd *DESCRIPTION
7bf1ccc26e5826ec963a19aff15d41f7 *LICENSE
880f7871a68ce10163b5959e0f621f29 *NAMESPACE
8cceaa716220312fdcd1646d6cf3168e *NEWS.md
ef0b76b7bdb3f144dda77b85f8a915cb *R/EMM_functions_cpp.R
24a3691c4c26692baa696daea12e200f *R/RAINBOWR.R
715799b9c649db55f967307e9840bef1 *R/RGWAS.epistasis.R
297a45261519f741075f898e4300f19c *R/RGWAS.menu.R
f4500e6c9e96fc31060fb35f2852d50b *R/RGWAS.multisnp.R
ffe9536db1b0d58cdb6d5aeb31db964f *R/RGWAS.multisnp.interaction.R
772b7459dac761d47ddf526471892881 *R/RGWAS.normal.R
8c4933bb427e930acacda6393ea819cf *R/RGWAS.normal.interaction.R
c8acb48f27207f71fbc220d519bd005d *R/RGWAS.twostep.R
0588c92cc4e63a1cd71031042f840f1b *R/RGWAS.twostep.epi.R
3fae5741e4163d2d13f86d81133eed70 *R/RcppExports.R
9c05bf91332d495401032aaaa828450b *R/Rice_Zhao_etal.R
df429b1913154d233f3ccde96623eed3 *R/Rice_geno_map.R
7df6744855cfd40bc32b4a3eb042c013 *R/Rice_geno_score.R
5f20b06862aa883e57d676818dfa4dd6 *R/Rice_haplo_block.R
33af6bcfd26b3b7e49dc438e5bfacd0c *R/Rice_pheno.R
238ca6c7459478582d7843688c5f9d66 *R/SS_gwas.R
6e6aff52daa24ce5f80c36770647d469 *R/examples/EM3.cpp_example.R
9ece246baf640f535e14fbb001b3bd2f *R/examples/EM3.general_example.R
d906a561fbd0ee0c744ec9df49ed2151 *R/examples/EM3.linker.cpp_example.R
deec406b50bc14d8e8f705f52fc91e7d *R/examples/EMM.cpp_example.R
7a04da743497cf656689a61793cab4a9 *R/examples/RGWAS.epistasis_example.R
7e55d03a0d1cb9349eaf3220fe57a143 *R/examples/RGWAS.multisnp.interaction_example.R
89232be44b77f7665282a006d961dcea *R/examples/RGWAS.multisnp_example.R
aabff0b2202feed0f7e5ece31b756f8a *R/examples/RGWAS.normal.interaction_example.R
804bc3a4252392dabcc318c88e2e7544 *R/examples/RGWAS.normal_example.R
bb91a50f7a2e93acea205785296221ed *R/examples/RGWAS.twostep.epi_example.R
17d969f38f0063cfc5c9053e66529b42 *R/examples/RGWAS.twostep_example.R
a765e1914d9a35491b42a6cfbe295785 *R/functions_for_RGWAS.R
2aefd1658da3046c039377b9f06de0fe *R/genetrait.R
20da2ed37e37da086612e7780ca634b8 *R/other_useful_functions.R
cabcde6f5f4c106c8ac9f2b7e68b9706 *README.md
7783a0740e334ec789be282da8eb78ef *build/vignette.rds
6b4a2b63a45a37d919de08bd62e76853 *data/Rice_Zhao_etal.rda
7c22e8bd5c047dad605d2b0b401627ba *data/datalist
8eb3b4de1fea9417be9185fd741eb1da *inst/CITATION
ebfb4819fd1e6de09515f0e86196ce96 *inst/doc/RAINBOWR.R
af67f10537e800bb24de22c5592f7866 *inst/doc/RAINBOWR.Rmd
8a5e177a6d1940f17d382f670bd22584 *inst/doc/RAINBOWR.html
1159b3776ae0b50132097e70299fcd48 *man/CalcThreshold.Rd
e5e909a8c0a3eaf26e219d8d81ee91f5 *man/EM3.cpp.Rd
774c8556133e550efe862daacbd7526f *man/EM3.general.Rd
d9282425b322ed1a97480c81f345709a *man/EM3.linker.cpp.Rd
9d1e85af96ea5ab56beeab2932d8282a *man/EM3.op.Rd
cea11f1e89103240acdce9e10f89b170 *man/EMM.cpp.Rd
23243f44e3827c78d5127e6adae99b8a *man/EMM1.cpp.Rd
a3623fabb2886c582e12f83f5d5df0ba *man/EMM2.cpp.Rd
2433515b1cea72465a262439baae21c5 *man/MAF.cut.Rd
852283c736384a2767eb789ab546463a *man/RAINBOWR.Rd
20f9e7ea5c497ceca211d18e0c0b4634 *man/RGWAS.epistasis.Rd
3f95c1d135bbc3b48bfdc72b5ea1d29b *man/RGWAS.menu.Rd
cbf01be99f68c51f78411d3eea50ee30 *man/RGWAS.multisnp.Rd
2f7efb648a8c655a69431b10b1ff9b80 *man/RGWAS.multisnp.interaction.Rd
30d171b254e6029b6e674e14c698f521 *man/RGWAS.normal.Rd
cadce258b36584ae8d2a58e5f5e3ff0a *man/RGWAS.normal.interaction.Rd
4adb403c1b38103a1c9e84b3e10bd775 *man/RGWAS.twostep.Rd
e4ba73a92bf5cfa468767ac77d1b774e *man/RGWAS.twostep.epi.Rd
4ef455ab0252746b3bffa52624f54ba7 *man/Rice_Zhao_etal.Rd
104280b9bc00f590a0b6d39269ec45f7 *man/Rice_geno_map.Rd
445b3d6a2cc327121ba0dc2fb9940ce9 *man/Rice_geno_score.Rd
3155fc424b4b0339b55ed3fe4c58bb7b *man/Rice_haplo_block.Rd
6aff726f13a3be7a488fbbc9968f12c4 *man/Rice_pheno.Rd
16085677652bfa7b9c88240fae6f44f9 *man/SS_gwas.Rd
d2b00bec97db2b56e92e856810f46543 *man/See.Rd
8204b2a227960cb25df7f0e4eab3c348 *man/adjustGRM.Rd
e1dceed2d2cdcddf1f02a6c0c6fa291e *man/calcGRM.Rd
8753e5dded5eb01bfbe644aaa241ead8 *man/convertBlockList.Rd
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00ee68461661141ac35c2337d0f8749a *man/design.Z.Rd
6f35985ae98386ad7e02cac6b8be0451 *man/estNetwork.Rd
3368b0a4f0cae47cbd8254a6a9764e9a *man/estPhylo.Rd
1b5d7658f519b40d0a72e724d94a20a8 *man/genesetmap.Rd
c49c70fac0a7fef2fad8f8f261080c1a *man/genetrait.Rd
c47b5be2c96bf92935967d991924d3d9 *man/is.diag.Rd
dee7b90441aa20d5a7c84f0d09a377ad *man/make.full.Rd
f8cbe5a273a9224bcfdf28ad16e9e5b4 *man/manhattan.Rd
e495937f8a4a321a219fa6aa80cb7a8b *man/manhattan.plus.Rd
edaa5b668ae14353ed1f245f5b746920 *man/manhattan2.Rd
932e532650ebd3eeaa6d688159e04a90 *man/manhattan3.Rd
d3bfa0bc2a7eb245148af48ca0b01c7f *man/modify.data.Rd
54eca9adf15cdd14e2dabe3861c300d2 *man/parallel.compute.Rd
c6f52dad1382b5164c511baf8294f243 *man/plotHaploNetwork.Rd
cbb3ba62ddaad0972197b83ddec6ca0a *man/plotPhyloTree.Rd
98440e83f68a599e7a9532ba64047e1c *man/qq.Rd
7e89dfca802a25f8098827ec50e17f4a *man/score.calc.LR.MC.Rd
47761e59fdb9ed0b5ec6e46f9c2e8e32 *man/score.calc.LR.Rd
b4705ceb1e02247a3dde499b2cfc19a2 *man/score.calc.LR.int.MC.Rd
4f5c0c0618ccdaed05bb4f92d54a2e27 *man/score.calc.LR.int.Rd
1e358a37a4a626856a3d0c7875f6ca81 *man/score.calc.MC.Rd
f3c714e876e0752763c91fbed4577a4e *man/score.calc.Rd
7b0a345464a23426da1412a2fe625c0e *man/score.calc.epistasis.LR.MC.Rd
4e006388a47931a91e61bc490d8e9b10 *man/score.calc.epistasis.LR.Rd
c1bd0156129f8583fb7592884da7ae17 *man/score.calc.epistasis.score.MC.Rd
0658258e1209a19d3abeaaf45a5297e9 *man/score.calc.epistasis.score.Rd
89876c9836fbec8c6a81256dd80ff0d6 *man/score.calc.int.MC.Rd
2b8b514c426520dc4037204c69e8d61d *man/score.calc.int.Rd
03cd2919737396d67ff62ddba8381ac6 *man/score.calc.score.MC.Rd
df52f8e401fd2d25bb851dbfeb94247a *man/score.calc.score.Rd
f31871427ffdd3f28545b5415dc0b707 *man/score.cpp.Rd
31dfb8875ad37cef92160006fedac526 *man/score.linker.cpp.Rd
e933603db534dd978f8a364ce4d7eb78 *man/spectralG.cpp.Rd
360bba514cc60960abf248914906903e *man/welcome_to_RGWAS.Rd
5747108ebe3258afae5de388b52ba935 *src/EMM_functions.cpp
72c2d7b1def2e88000a5e639496a6a82 *src/RcppExports.cpp
af67f10537e800bb24de22c5592f7866 *vignettes/RAINBOWR.Rmd
