3af2ca4671d1c06931a8d18fca432a29 *DESCRIPTION
fc61963200f2262218208b22369c5815 *NAMESPACE
81205196e7af95d3b5a786b42629a39f *R/build_index.R
316f4c958c06f19a97d33dc53e1ea529 *R/get_fastq.R
a898e1108e6458fdb36bbb2d410f0146 *R/get_metadata.R
2b10fa6894e5262fd5989df56749570a *R/get_srr.R
1996c31607dd3e4e38b5dd12067092a3 *R/process_geo_rnaseq.R
b3c823571317ed938aa028cc855653f2 *R/run_fastqc.R
9e7e1b9f2f350d2dd5e9be2d3ef51481 *R/run_multiqc.R
9d9031c705b11ce9661bba7ab50cd288 *R/run_salmon.R
641975039f35096c832243cf4e4c4aea *R/run_tximport.R
09b50c7f3f5828bd3fba7df45cd471b7 *R/trim_fastq.R
9b8adb49e9a2376fe5dbe731859df6d6 *README.md
c365ad19baaabb2799d4d9bb8cac21e3 *build/vignette.rds
87c1a72b7c58a52df429a53e60b7b405 *inst/doc/vignette.R
01c33e0ef7674735952ac21aa985c1c4 *inst/doc/vignette.Rmd
4b17418b35e22a2626edc1ce20c301aa *inst/doc/vignette.html
f2c2e40dbf6c90e841ac640104a992ed *inst/extdata/NexteraPE-PE.fa
7867e2dbfd301758acb0f1eefaf7594a *inst/extdata/SRR5890521_pass.fastq
dbe81d7c22bb0f956044d84a6c85e1dc *inst/extdata/SRR5890521_transcripts_quant/SRR5890521_quant_new.sf
52ef7a7f9639d0277e27baa8b25374bf *inst/extdata/TruSeq2-PE.fa
5fe54165fba9cf201f97e0c4cfeaad5d *inst/extdata/TruSeq2-SE.fa
356e426e476e887c83707a484e52a319 *inst/extdata/TruSeq3-PE-2.fa
8440d286248134ac0df417272f9a86bc *inst/extdata/TruSeq3-PE.fa
1e7fbc11c060943720459864cd48235d *inst/extdata/TruSeq3-SE.fa
9677153d021b69f09f0830691e63f2e0 *inst/java/trimmomatic-0.36.jar
9677153d021b69f09f0830691e63f2e0 *java/trimmomatic-0.36.jar
950fdef484a82716836c35aea794594c *man/build_index.Rd
9a2bce4cd491ea60bd083c8d0dc42308 *man/get_fastq.Rd
df5100dd0f6b6ca7f5f10b72992aa6a7 *man/get_metadata.Rd
9cf93d144f749bfef89cc73419233191 *man/get_srr.Rd
e0109fc9b5897a987c7376fca684b3e8 *man/process_geo_rnaseq.Rd
a56110a0a2d4519ac3f43608066ad664 *man/run_fastqc.Rd
ae7e8cee939263596f7869bb2d556297 *man/run_multiqc.Rd
a6491418592cf48040b16899720cc61f *man/run_salmon.Rd
74ffea2c94c79416b88af9ffa2470b66 *man/run_tximport.Rd
a65273eee33c0d86038ddab02dba0f97 *man/trim_fastq.Rd
256ef9cdc531ac1b5b823318cc8bfb7a *vignettes/ref.bib
01c33e0ef7674735952ac21aa985c1c4 *vignettes/vignette.Rmd
