20460d8d08c8a6d01d9970f70a4d104e *DESCRIPTION
7753eaf3efd670e080d3aa09f519fd18 *NAMESPACE
d2bbe069515f01d32aea7ea1586e257e *NEWS.md
85c71429a6f135a683f7025cce53afa3 *R/RcppExports.R
d546f2cfcb396a3a47ec486375c81e47 *R/all_tools.R
86c4d3a45c75b41a373d71f7179d45e2 *R/deploid_utils.R
eb53e6c41d2b0b4d01a02b2844c742ef *R/errorAnalysis.r
af01c9be39b7d0da68e198ac4955aeb6 *R/interface.R
f6ab0ff38eebfd444dd87312346cad3b *R/plotting.R
48e69b5aba487ff2927416a70745e702 *README.md
7080893e02c49cd296d4424b9be55069 *build/partial.rdb
2cad08193815864d8a26f8ac768ef199 *inst/extdata/PG0390-C.test.alt
07eccfaeb952de9e0460bcc12d457b22 *inst/extdata/PG0390-C.test.ref
cdc601c1d8d4eec2bc80512eb8ee6b6b *inst/extdata/PG0390-C.test.vcf.gz
a18778772a21e2614f37800bf1e3d22c *inst/extdata/deploid.png
d5122a085c423ba8bdeff856b6a6f768 *inst/extdata/labStrains.test.PLAF.txt
a865c12e4c27f049106f134b695a0b82 *inst/extdata/labStrains.test.exclude.txt
58b29caf285f90a0900f2b04443ec465 *inst/extdata/labStrains.test.panel.txt
e76f2f8a9ef014de85eae10b32d4ac4b *inst/scripts/dataExplore.r
72bce8d5436a3d2f0d039df3e572772c *inst/scripts/interpretDEploid.r
b771b4a42dc1b40fec79b4dcd0fb1393 *man/DEploid.utils-package.Rd
a090cb67fb31b57da0a23fa1275fab5c *man/computeObsWSAF.Rd
2f93d87a0a025cd891badecc4ce7dcac *man/extractCoverageFromTxt.Rd
1a74f2e747b991b94f4b185333ed12b0 *man/extractCoverageFromVcf.Rd
ef3865365d743041e7edce7f1fb19824 *man/extractPLAF.Rd
887ad1066e31c4815f08e5ea4e682944 *man/haplotypePainter.Rd
99f5099188315ec39eb43958ee524376 *man/histWSAF.Rd
eb282c0f88633e1f52c32f08db115cef *man/plotAltVsRef.Rd
a5c1088852615eb3478974340e4fa3c9 *man/plotObsExpWSAF.Rd
dfc66f56333efaeeafb2e5884bb83131 *man/plotProportions.Rd
6ba9fe86df16a7b20f3d34a4389101ba *man/plotWSAFvsPLAF.Rd
f3684c67353d3f7b3b5efc8bfdbddd3e *src/Makevars
f3684c67353d3f7b3b5efc8bfdbddd3e *src/Makevars.win
c26d692c5235c423eeba0c2674757d6c *src/RcppExports.cpp
189c1bad45dac4c6b3190480425a1e83 *src/rvcf.cpp
d2bc5f2b45a4fa318526806d2ac08884 *src/vcf/exceptions.hpp
2bfa262ffc355802a21f5c435c9124a2 *src/vcf/global.hpp
7fbc338309ac38fefcd64b04bb903e34 *src/vcf/gzstream/COPYING.LIB
d632447d46c9b1d6ab0103de7a665034 *src/vcf/gzstream/README
ba512bdbb2404b95b4303f226f9d8ef8 *src/vcf/gzstream/gzstream.cpp
068fd831bb8356b27564acfe1fd9ccb4 *src/vcf/gzstream/gzstream.h
caa5ea78d04f32a480fa6d4008817cec *src/vcf/gzstream/index.html
78e2cca98f5d11a43af84eccdd9fb96e *src/vcf/gzstream/logo.gif
72767782fc756a7855f92361e949b499 *src/vcf/gzstream/test_gunzip.C
ade409024dc2511702be4b25cec98304 *src/vcf/gzstream/test_gzip.C
bede5d3cd40d8a655793634e9e527a33 *src/vcf/txtReader.cpp
d91e32b2cbdb99b7a4de19a1e300bfcc *src/vcf/txtReader.hpp
65330fa96e44f48a7b85c73750f0b108 *src/vcf/variantIndex.cpp
6d4f3e64f6db7dbecaa70d26eec74aee *src/vcf/variantIndex.hpp
3d782d8ef8bd87d521c4deb49c0fec45 *src/vcf/vcfReader.cpp
ceaeac2eb0bbb90071ae1ea9321ed0be *src/vcf/vcfReader.hpp
fd0cf88dda9eedc99b0b88dcfd05b705 *src/vcf/vcfReaderDebug.cpp
2c209457b5eae46c9d7b6e7db471e659 *tests/testthat.R
8c086fdee84a960d08a2ce339fc2a969 *tests/testthat/setup.R
8d832c9ab94db40f55197cb03179d726 *tests/testthat/test-extractFromVCF.R
24e5ba9b0b435b6b940c02bc858da57d *tests/testthat/test-vcfreader.R
