2dfe612a0248b77d04cfcbd3f310155c *DESCRIPTION
0a5e48e774469979d8eecbdd8bfa0db1 *NAMESPACE
f8da85779df7b3fa239e36c9bbeb6004 *NEWS
d93201fe2d9a1957f67636507d6ec516 *R/HMMplot.R
b2d1b46f845b84de93414ca3bbcd5bec *R/RcppExports.R
9934b96d3fd036bd5b99a96efe9fcffd *R/SSPlotter.R
165a02f81c29866de258f8e32e010ec9 *R/biofam3c.R
dc9207d8b8766f8f9a28d58a9b104db2 *R/build_hmm.R
62b5c52f8f64c27d73e030636e40e42e *R/build_lcm.R
5bc4a8fb9c52c74d678e9dddd94c6c70 *R/build_mhmm.R
98ad2df0b925706f5972827119bb48ef *R/build_mm.R
e3fa9043433d6f39eacc8eef3003b282 *R/build_mmm.R
2c91f9351528a769c7f9005ed9c1f787 *R/colorpalette.R
c501731291a9aa14d341e60442cbe0fd *R/combine_models.R
8b444354246726514b5904c78f019835 *R/fit_model.R
0555a72060f32bc86522448fe8ebfa4a *R/forwardBackward.R
22942b867de07c6d79970a48aef829f2 *R/gridplot.R
8d800a6c42660ef5718e86a9ff168b04 *R/help_data.R
93138615ff5a0db50232dffe5fd181f2 *R/hidden_paths.R
e9a202767bc83aebed76a38e87798dfe *R/hmm_biofam.R
ab2e784177d1d691fabad95439319d17 *R/hmm_mvad.R
0ea0a6b2f472f2907e3872ecfa915c10 *R/import_seqdef.R
707cca9dfdea084fb6902fb026c1c5cb *R/isColor.R
68b539df5ec06dfe4fdc99cc3398ac15 *R/logLik.hmm.R
0d17f85686370ef6d21d13281b88af7a *R/logLik.mhmm.R
73e969fdeed6ef84167017fb197fdbe7 *R/mHMMplotgrid.R
61eadb7af0f1315e4a5873d54c3d2d49 *R/mHMMplotint.R
5ab2bb928754a842ad71bc117be7fcf3 *R/mc_to_sc.R
6edf113670336e90d4f195fab3d82b1c *R/mc_to_sc_data.R
7065adb53ace3579232d6e1c17ec5a39 *R/mhmm_biofam.R
726f387bf417425c09ae5ac8943dc3fd *R/mhmm_mvad.R
d9067cde3933fed701a4fe40e71ce7cd *R/mssplot.R
b7ffc34a1febe4d5532a6eb6fe564510 *R/plot.hmm.R
fca2de08ac8bccd48e863d612c64a9b6 *R/plot.igraph2.R
8766032b07a4a05b1f30a1511e253bbd *R/plot.mhmm.R
f361a7fa651b1226720ac81616642a03 *R/plot.ssp.R
01aadc3edf15fa027e5786dc5a219cc7 *R/plot_colors.R
fd61ed3b61557c3d1c1dc9c74f4b4915 *R/posterior_probs.R
1b34a268e69de66c179193c1d15896ab *R/print.hmm.R
bb251626065bd2b982524ff6fc10ae59 *R/print.mhmm.R
1ee30703cd7779651aecca4dcb10a181 *R/print.summary.mhmm.R
ac46574177576f71f75ea5e88d39754e *R/separate_mhmm.R
3afdbcedddea2a60142d90f99511e0b0 *R/seqHMM-deprecated.R
9a9a64d249092c719c8ed3b846406bbc *R/seqHMM-package.R
d2230ead1609466c2b477e1ac18d667a *R/simulate_hmm.R
22dbb7ba3ebd24473a2a31e302bbcd96 *R/simulate_mhmm.R
7f4609c5babbb85bd0e0f7b2a0548a2d *R/simulate_pars.R
d89f049fad615c06487b2f3ce9056d37 *R/spread_models.R
e639e10cffc244b9fdc8c7fbe3f31ccd *R/ssp.R
7293de857602db881b72899d1205f1d7 *R/ssplot.R
72ca0b1b6989b9d4403e06ab9ad7d8d6 *R/ssplotM.R
7d108a5c21c22f60d7b168026d6ebc37 *R/summary.mhmm.R
f9d0e78b790b25f4dc2330cf76bb0a90 *R/trim_hmm.R
4bd40ef8c5276e4f83f604620fba481a *R/vcov.mhmm.R
f05da23d836af53f924fb0622b1746c5 *build/vignette.rds
24d8098b9e16c0fd497d674af8c740c9 *data/biofam3c.rda
07df3b55fd8db67073a1d34aaa35630e *data/colorpalette.rda
dd187977cf5880d446b623d1c8982a88 *data/hmm_biofam.rda
fd3c82e79109fd44a48e6d07597f4d19 *data/hmm_mvad.rda
57777ad97b24b5d51d3495527525dbc0 *data/mhmm_biofam.rda
3889dcd736e00a5e199e246dfc5a2f9b *data/mhmm_mvad.rda
b859b22ebccb819a4b2b1e702c2ae982 *inst/doc/seqHMM.R
1ab23e7160c472941ad23356ab766723 *inst/doc/seqHMM.Rnw
a716b98d1ffd60631096f67b60ae08cb *inst/doc/seqHMM.pdf
9196956b51927b19f37f91519031a838 *man/TraMineR_imports.Rd
904eb3c4110f850fad97b82d5a1654d3 *man/biofam3c.Rd
75cb90d5c03b77573ca094f2ec02acc0 *man/build_hmm.Rd
8a40cf3abc74ea333d754b21ddcc322d *man/build_lcm.Rd
fc79fa6d58788094ac3684cfcbdce748 *man/build_mhmm.Rd
ba55b19e448dfc766b17ff17d6702b6a *man/build_mm.Rd
8d47bb1af7d27375b6d709e28138066a *man/build_mmm.Rd
357f859321eee32f19cdd81b305a4fa4 *man/colorpalette.Rd
adb55b4a7836caf4e956bd8942ef61c7 *man/fit_model.Rd
86b7583855ffaccd7b2e102eeeec47ca *man/forward_backward.Rd
48cad862e0c7476fc0ae5624eb659a4a *man/gridplot.Rd
c6502aa0116fdba60aa0e3e6428beace *man/hidden_paths.Rd
4982eeeac5024b1dbc2ee51e49ec8e84 *man/hmm_biofam.Rd
a186c1abea107a303df9cf7b2ba11ceb *man/hmm_mvad.Rd
acab89d27889b7dd9fc99376ada8b175 *man/logLik.hmm.Rd
9a29abab5384338ff566a1e6f5a886f7 *man/logLik.mhmm.Rd
72fce9bf65a36d7cf91530fcb105b41d *man/mc_to_sc.Rd
aea9d0d05d432b53fd37ec77028f93e1 *man/mc_to_sc_data.Rd
b5fb49a3a81e01b288ea8cf061a9ad8c *man/mhmm_biofam.Rd
1308d087e22c836f77bfa1dffbe84ad5 *man/mhmm_mvad.Rd
a1a7fb7590b0d30dd73f74719dc1594b *man/mssplot.Rd
f3ac51a2142e9d6c148c8de365f708af *man/plot.hmm.Rd
1a6e526d86979d6f8952688017df8894 *man/plot.mhmm.Rd
2a3dc142d91f48860f84527c22d9ac84 *man/plot.ssp.Rd
01aa3787f0ec26b4b044d64efedffe22 *man/plot_colors.Rd
1c8fbec1d06c0a91a887f178c1ef96b0 *man/posterior_probs.Rd
520c81a9020a80d611a723c12def971c *man/print.Rd
d800a9cba844bb97cc6fd21656fe0b44 *man/separate_mhmm.Rd
c19e5cea7cfb952ded80c7582cc455fb *man/seqHMM-deprecated.Rd
f4dd3bcbbd3463f4a65a8489df2178c0 *man/seqHMM.Rd
b060599dc83055c2b7b1bafb3d88d826 *man/simulate_hmm.Rd
30b52173bcd4d2a5c203bef3fcac6b3d *man/simulate_mhmm.Rd
539cd7375989a0c7a17adfea719a4597 *man/simulate_pars.Rd
8191d92c18868a6ef0af348dc06d7006 *man/ssp.Rd
4271bd37855b1137d174d2f48cd96dc2 *man/ssplot.Rd
fe583ef51dec82b369851df6b302bfb7 *man/summary.mhmm.Rd
7290016c9d13ea37a31503f63f675a89 *man/trim_model.Rd
490dc1c0fbbfbe7aad8d01bd385d2807 *man/vcov.mhmm.Rd
8ec06bb389158eb16c93bf86ceed361f *src/EM.cpp
1939b4beaea00a0d6849b7422cf2905c *src/EMx.cpp
9ae100fdd0b23ebcdaefe1704a0077ff *src/Makevars
71d4ef0b42bde94eef5e46cfaaa4bd79 *src/RcppExports.cpp
bb89f3d742d77c780cd5ecfb7a7628bc *src/forwardbackward.cpp
0370b14dd04f507521a9f25c9aa44036 *src/forwardbackwardx.cpp
08d30ba849a440f19ad6611d7922fcd0 *src/internalBackward.cpp
77c340d97e3949b6c3b90761d87d6cdd *src/internalForward.cpp
778ee608b670c97280e07fbf25812696 *src/logLikHMM.cpp
bc3eba9124daae000d5629921d36c1c5 *src/logLikMixHMM.cpp
96791a241beca3d939798b1881f52a82 *src/logSumExp.cpp
bf153e5ecfa7b44e4874376488a85aea *src/log_EM.cpp
beea36948a0a937f8388aaf09bb55c73 *src/log_EMx.cpp
697e497102f415ab9ceeee3fe2c36644 *src/log_forwardbackward.cpp
64f3134c08615a246a3716c3c07b3f7d *src/log_forwardbackwardx.cpp
d857c92b388db9408f61489f1166807f *src/log_internalBackward.cpp
be13be672e90a76c3e7229a80ce20e6b *src/log_internalForward.cpp
b3bef205702739aca05e7e8fa8baaed9 *src/log_logLikHMM.cpp
fba0560dd16749dbade118b7b336b9b1 *src/log_logLikMixHMM.cpp
6cee8f37f448b8ccfdb056c0a1e1bd6f *src/log_objective.cpp
83c68a29de85fcbe6a49d1de6135952d *src/log_objectivex.cpp
ae0f4b279344940f9d32fa4663de64e7 *src/log_optCoef.cpp
7eb7c97e475fd3f10736378639d330fa *src/objective.cpp
59a77c2023e03b32d90beed6bfe58b88 *src/objectivex.cpp
705226e532b28bb132e191a6cf1e1632 *src/optCoef.cpp
1ab1b744fd8db1f3cc171a9596175104 *src/reparma.cpp
54960d2859f7837500e7428c8d242ba1 *src/seqHMM.h
a5904e80f3ac42dbd234d397b9edbe0c *src/varcoef.cpp
5de50d4922bbe6214d890d2d3b604620 *src/viterbi.cpp
bcef1236fb556b9e9cfcbae7e796c0f8 *src/viterbix.cpp
3c56cb36b28f2491708bb45add9ec5a1 *vignettes/references.bib
1ab23e7160c472941ad23356ab766723 *vignettes/seqHMM.Rnw
