133043de698d88fb8d69fedd09c64479 *DESCRIPTION
4721dae92f8a3d86bcff9bb610ace0cb *NAMESPACE
bdb9b510e36f9ff4ee0f3f83b7ecb4fc *R/add.to.population.R
b8b2de9a9608dcc7cd8928fc783f6619 *R/assignLinkageGroups.R
418786a25e887907ff3cad95ac95e48e *R/checks.R
4b84425aaa61a0c6cfc04d8ef054847d *R/create.mixtures.R
ce8b37c26609f19d438f570b927bdf8f *R/create.population.r
328ba4fb5b252c1cf37a0a5bde57b457 *R/cross.denovo.R
d338e9b94ee55e2262ccce0d8a867923 *R/cross.saturate.R
e7890384df355085babb75fb84aa43ff *R/fake.population.R
690d92e3ec1379a1e3a5ad442402e314 *R/find.mixups.R
db3f658331b14d61472ebad2c73a795a *R/findDiffExpressed.R
b884eb1fbe74b1807931aa1f94c7fe4a *R/generate.biomarkers.R
4b9b494c458d7c8d2f134ad2954ac39a *R/genotypesToCross.R
ce8c0de99a936054623be1cd2e60ea60 *R/map.functions.R
f613fdc7447d072698539fdca1421151 *R/markerPlacementPlot.R
79b2bc7f001392db83f1aa13ea5c3b92 *R/markersCorPlot.R
a25b825c5caa866cff0192f4c1c06599 *R/plotMapComparison.R
055978db254aef64a1c92996cdaf3574 *R/plotRoutines.R
d58c07be3af6900c8396ed318abe8f84 *R/postprocessing.R
4df007bbece2367c96b316fca163a8db *R/power.plot.R
10dbf5fc05ce87e3158cd62aa23d1508 *R/qtl.comparison.plot.R
0af90b22be1c3256a7796d7a8f3c2f41 *R/read.population.R
4c93fc386b741ef475a21cb24d4248d7 *R/save.gff.R
0dba037533bd51c79f4dc9aa1ae1fbb2 *R/scan.qtls.r
b21fe12347854175f8f3ecb26517c866 *R/transformations.R
3616ad346401dd8e1ee5de25e6f98650 *R/utilities.R
c6c524b18fc3ba43f24362a5a075ebf2 *R/write.population.R
f25010bc6abef8ba4a2c24618f42b7e9 *README.md
c6f22bd783c8ea4eae92fe831a3a527c *data/datalist
4f2dcab0e4b7fb078e00106cff63d6e9 *data/testCross.rda
756f709d4e7ed5df18f7f99ac6b44494 *data/testPopulation.rda
13cac3de174a3449230190f25932c177 *inst/BUGS.txt
a86ac4554a86d7dc86f4c4dba46b231e *inst/CITATION
4850a80ef658952849306ba82c066a20 *inst/TODO.txt
a1004f815f82403cd6eb5b68362da9a6 *man/RPpval.rd
57a3baf838aca3f7887ba4a275ab14bb *man/add.to.population.rd
70cb7b1bff95f43d351e0d1e8d991d81 *man/assignedChrToMarkers.rd
b4069d649aa99223103c3630e4e66e6f *man/changeChromNumber.rd
72aeca1f614deef24d9ac3f5d8f2fb5d *man/create.population.rd
499627aae2b5364d4020f532bdad2afc *man/cross.denovo.rd
570f4d44db19f763fd4cffadd982da5e *man/cross.saturate.rd
b90fd31b2fbfdd7dfba8e99777352dd3 *man/fake.population.rd
3d2bdb72f7b0d05b0b667a8a3dabb1e2 *man/find.mixups.rd
9639f9c699eebf6bba70f62e48b85fac *man/findDiffExpressed.rd
5bdd2d3997340fb1ec22d10d28cfe94a *man/generate.biomarkers.rd
86629d7b01cf9a4ae6aeeb15ff27e822 *man/map.functions.rd
cc017e45b43ae06189ce82b1246ff54a *man/markerPlacementPlot.rd
179cbe6714d8eac237855d43ab673cf5 *man/markersCorPlot.rd
23f588ecc032d90273872b8a6a234899 *man/phenotypes2genotypes-internal.rd
c28138105fc57f52bd2e27fc76431e77 *man/phenotypes2genotypes-package.rd
72b7aea3f1fb44f314312802cd5d4551 *man/plotChildrenExpression.rd
7f9eb3781266c9a1f109a8a870c13fb6 *man/plotMapComparison.rd
71fd940267f8d72ceeb786000e85406a *man/plotMarkerDistribution.rd
6bd0ff7a91f9783290b4bd881ee14e84 *man/plotParentalExpression.rd
2a9ab0c6cd5debee0754c875fb2d1443 *man/power.plot.rd
efbe2d1cc1c4366ccc16337a6c899b0c *man/projectOldMarkers.rd
b70925b3e990958888c5ef41d8f81b11 *man/pull.biomarkers.rd
c54ea69d741af479dc52b48f8a4cae86 *man/qtl.comparison.plot.rd
735d8c7cdf78096592c2849d0c8476e7 *man/read.population.rd
bb11a1858f79a9e9f33176574f4e1188 *man/reorganizeMarkersWithin.rd
80856557cf1adfdf73f21e361a32d0a7 *man/save.gff.rd
2353f24fc09c007b6159e184fcdc4361 *man/scan.qtls.rd
5f55aa32b4ace5099037e6a8de2d69d7 *man/set.geno.from.cross.rd
37b7e9d0018f85e78aca68c13360c6d6 *man/testCross.rd
b2ea0a6c702bbf902ccd450ed02b0878 *man/testPopulation.rd
cdbdbabcb8b7cf24df3f9a2049cd04ff *man/transformations.rd
4f3fadbdaa98ce0041af1d650967206f *man/write.population.rd
c614670300ffe2199f2667170e8930ab *tests/1k/maps_genetic.txt
edba9f746412f41c8f84f4661d30c1ae *tests/1k/offspring_annotations.txt
f18b60c259244030892484067cb384fe *tests/1k/offspring_genotypes.txt
e1ac5ca3a2ac725ea629372cb3168555 *tests/1k/offspring_phenotypes.txt
2beb99dc6038b0f675a5901ef801e155 *tests/1k/test.r
d3e87f4702a52f51d400e07d223802b8 *tests/genotypes.csv
7f2eaa77e8dbe35f5aebcd4303bdc14d *tests/map.csv
7db0d93af28f6c604506eb4020fb86b4 *tests/mycross.csv
2cf0f1c9fa7da928173cc3f725b6d132 *tests/offspring_phenotypes.csv
6e4101faf879fb66d32a48a2c33ee982 *tests/parental_phenotypes.csv
9976511b7ced7112af49d2da435eff5c *tests/test_analysis.R
