a01c593eef4569114372ddf75921b1b3 *DESCRIPTION
f523d098f5a67df5d57a1b44e0c5e8c2 *NAMESPACE
5f44fc0629414ae639439528ec1767eb *R/RcppExports.R
0a17377b8a237f709ee8f5ade52f4de9 *R/bed2matrix.R
2e1e2a0854b7ad944c7623967bf8f956 *R/hist-plot.R
6409b8bf6721874c04d45e5ae95bc6a2 *R/iram.R
f37ac0ec33de60ccfed5f6a2782b936b *R/manhattan-plot.R
c9ebdd9aeed0d839b158c057fff06968 *R/pcadapt.R
77ac10515f855d099536cf62ab844caf *R/pcadaptRead.R
775f5f103e0da99244a0ecb3006c01f5 *R/pcadaptUtils.R
0ab0b579ae91613ef0f81414f2240d7a *R/plotUtils.R
97e4d2db6df6080f10b2405d8280ef5e *R/qq-plot.R
548f1271db5463a95263247f6a738c79 *R/score-plot.R
ac6cd8c5e2f33164c07ff7ad0a714263 *R/scree-plot.R
4c9832dcf021b8017711b648f48019fd *R/vcfConverter.R
618ea838b3c60e885b9aa42ea0b2cbd8 *R/writebed.R
ce1cedf48ff4f58342d167640b1c0cae *build/vignette.rds
cbeaee7f163edbe78fb18173b561c999 *inst/doc/pcadapt.R
b1d76020ca2783609b1e94405b30e3a1 *inst/doc/pcadapt.Rmd
ab94761f1f1b07389fec35a3e89d5e47 *inst/doc/pcadapt.html
ef4834e7f9855c5636f699d4fe3ce1ad *inst/extdata/SSMPG2017.rds
77c27515f59471c0b126a380a0b1914d *inst/extdata/geno3pops.bed
e920f17b5ffc326bee3f85221ef516fd *inst/extdata/geno3pops.bim
1e48952719e6a568a0681e464f953aa8 *inst/extdata/geno3pops.fam
cf5299bb5db7fc4b7523c3b3b4676e98 *inst/extdata/geno3pops.lfmm
77c27515f59471c0b126a380a0b1914d *inst/extdata/geno3pops.lfmm.bed
4787cc36bd31c884f6b85a9dd0160807 *inst/extdata/geno3pops.pcadapt
77c27515f59471c0b126a380a0b1914d *inst/extdata/geno3pops.pcadapt.bed
45ceab72851bc26d57fda69a865a7b7c *inst/extdata/missing.bed
7ce7ca93f655597d89cc1d98f61d8000 *inst/extdata/missing.bim
67bf9fc1964e298fdc124933c2cbd2bd *inst/extdata/missing.fam
2a9784c384bc4d14c3fd9c3a29507958 *inst/extdata/missing.lfmm
583f3465c048d3ebb9ca4dcebf8571e8 *inst/extdata/missing.pcadapt
16f0798923a4bd93037337e4174623a5 *inst/extdata/pool3pops
21aa159bc95851ee120a68c65864ab06 *inst/include/pcadapt/bed-acc.h
e33fdec85b4740d3e6385bb1a9ddd2f8 *inst/include/pcadapt/mat-acc.h
68b329da9893e34099c7d8ad5cb9c940 *inst/shiny-examples/app-pcadapt/global.R
806b18b36b130a395be9842cb0be0c8f *inst/shiny-examples/app-pcadapt/rsconnect/shinyapps.io/keurcien/app-pcadapt.dcf
6cc574a410b27419743feab74c579220 *inst/shiny-examples/app-pcadapt/server.R
d687774542bb7d305f2dae14460866ad *inst/shiny-examples/app-pcadapt/server/tab-histogram.R
1be40c00cd34b90bc37fda8009e28972 *inst/shiny-examples/app-pcadapt/server/tab-manhattan.R
185484325e561f331336ff6aa417ce3e *inst/shiny-examples/app-pcadapt/server/tab-outlier.R
578b0154b07b03fecf8b327b0b77b4f6 *inst/shiny-examples/app-pcadapt/server/tab-pca.R
8571d14802f3cebaad9b2e02aa7b46d2 *inst/shiny-examples/app-pcadapt/server/tab-rcommand.R
8c72999167af62fe29cd51e64dd40d02 *inst/shiny-examples/app-pcadapt/server/tab-screeplot.R
51cd3e2227ef0544db1ec9fd01221ae5 *inst/shiny-examples/app-pcadapt/ui.R
03125c8d9cc5a12ee43d5f174ad8bf04 *inst/shiny-examples/app-pcadapt/ui/helpers.R
3fada4bc98ddd9d0d8347ccc8a518200 *inst/shiny-examples/app-pcadapt/ui/tab-histogram.R
114587c48452b54494f3b2c193198b9f *inst/shiny-examples/app-pcadapt/ui/tab-introgression.R
689cec49cde49e79ed0435731d7bc684 *inst/shiny-examples/app-pcadapt/ui/tab-local-adaptation.R
c4f6fdf80db4f7d80dd516fba3d1575c *inst/shiny-examples/app-pcadapt/ui/tab-manhattan.R
ae89f777f2350c633e169da810c62ada *inst/shiny-examples/app-pcadapt/ui/tab-outlier.R
ed34ea500bec7844f8c82c129bda5f64 *inst/shiny-examples/app-pcadapt/ui/tab-pca.R
d2e4433f00929dcb4b509241af9821fd *inst/shiny-examples/app-pcadapt/ui/tab-rcommand.R
c583e27e148674345eecab3c96c02737 *inst/shiny-examples/app-pcadapt/ui/tab-screeplot.R
7d9274518d1e165e95ff45b7374e1a1e *inst/shiny-examples/app-pcadapt/www/busy.js
4e9768e25afc10db08d7ae11284d1252 *inst/shiny-examples/app-pcadapt/www/style.css
18ee71478d1efa978e7828c722160a0f *inst/testdata/full.rds
764264ea2b95868265f0f37043d5b669 *inst/testdata/pcadapt_v3.rds
ea4493f2a0e1ed27c1e8eb064d960cfb *inst/testdata/to-compare.rds
b85fbbce470f82a027907b9c9dd70b65 *man/bed2matrix.Rd
34df0fe03c28963acc7012b560f4949c *man/get.pc.Rd
33dfe8890c081c10744a161f9c4d3188 *man/get.pop.names.Rd
ea24d130d5ef502813b34cfb17614340 *man/get.score.color.Rd
826ec2d26621fbc58d8d24f141ff1666 *man/get_statistics.Rd
e0752a6cfe0cbd19c94d4d8d12fd8a96 *man/hist_plot.Rd
463511873009070d452673735f800780 *man/lfmm2pcadapt.Rd
4bd891bca7d416c2ec9e87995d9fc77b *man/manhattan_plot.Rd
7a61ff5e6bc1b4d316c4cd4978e06048 *man/pcadapt.Rd
e211a442112586ff763c1c908ed992b6 *man/ped2pcadapt.Rd
d81bcb8cf8a972e00007b3a5d2dda9c5 *man/plot.pcadapt.Rd
67c29e3d2858d3969cbaf990f74fbdff *man/print_convert.Rd
4507fd92bb204c3b766e086ebdbd0c67 *man/qq_plot.Rd
6cb42da2da3ae5ccee1c866c49bcee69 *man/read.pcadapt.Rd
3d0f5da58fef3a8c31692f644f7e17c4 *man/run.pcadapt.Rd
29258c27c5021ee917cf53f133b52c6a *man/score_plot.Rd
5b88683980bcfbcddc86acc3ea176991 *man/scree_plot.Rd
66dd28da6ba2c2491dddeefb9ea659a2 *man/vcf2pcadapt.Rd
ebbdb9b0c947b2494df8f57216fb09da *man/vcf_convert.Rd
40b5c5711687fdb5844a0b13348e50c6 *man/writeBed.Rd
30fbfce6e06203f988d2f5127eebb253 *src/Makevars
30fbfce6e06203f988d2f5127eebb253 *src/Makevars.win
8366f06d52bd64beb6a1620c383a3ffe *src/RcppExports.cpp
52a35b9b3594cf4746a9670b25bd93d9 *src/af.cpp
e77b5f37f7b19eaa3494e3308a38e3db *src/bed-acc-xptr.cpp
50a5a8f90c084fb8cde3cc7520724b9a *src/bed2matrix.cpp
f6f5562084bdba6afaff1089ebf9dadc *src/clumping.cpp
3f534ce91a063d14483cc437a9be78b8 *src/linear-regression.cpp
04c155365d5f642e73dcd8dbe7952e31 *src/nb-na.cpp
48bad359b5b9842d376da06ada654260 *src/pedUtils.cpp
52ed4a43d48ed4e0e7464ff28ed04bd6 *src/prodMat.cpp
bf27c922cf3524c3754ebf566e66b2e2 *src/vcfUtils.cpp
69884dd90df384463115ecb2c29b34f8 *src/writebed.cpp
a6dec124b61941bfefaba69934e2559b *tests/testthat.R
7c37415d1161aad6b8b4634de8a40ee8 *tests/testthat/test_convert.R
448942b6f6cd411e966e9195d4ced9d1 *tests/testthat/test_missing.R
004a37847b2b64e1624d0fb3f0c8df86 *tests/testthat/test_read.R
9512f6146adec0e0251ed52422e33025 *tests/testthat/test_version.R
b1d76020ca2783609b1e94405b30e3a1 *vignettes/pcadapt.Rmd
d41d8cd98f00b204e9800998ecf8427e *vignettes/style.css
