db2c92e00047259abfa9193148d8ebf0 *DESCRIPTION
7ce1fddfa54263a12ed92ea00fbea5b3 *NAMESPACE
50c73b0d838cf29a26074127aaf43a29 *NEWS.md
fcecec5b5cefc40da7b789d09e52f52f *R/convenience_wrappers.R
3bccc0484df43f30f91c4c07136ca437 *R/data.R
2b22cf56171c2cb4bc1d98bb67208bf6 *R/deprecated.R
e20f1874bfc27da9d9495ae7b45f2dbb *R/fbar.R
fb5ded25482db43625d0c4119e72db79 *R/gene_associate.R
e2f42338de534be5daf94a1c8f71fc4d *R/gene_expression_evaluation.R
045aa8e2461267300fea874527344d71 *R/metabolite_utilities.R
5ad1f2f50e9dae18c7c024d62e61c423 *R/parsing_and_conversion.R
7f3daaf446a342adf7cbdfa0fdab2b3b *R/utilities.R
23762afd7008a50f0bbb479f4c307243 *README.md
9101193cd2d448a77ec0839309f77c91 *build/vignette.rds
d9c76e6acea65bb8fc27324566405d03 *data/ecoli_core.rda
7f1bd88318e9e0e363106cf932be8125 *data/iJO1366.rda
05bfe65a1fa253fcc522a3a4fd2107fd *data/nutrient_types.rda
9b156292175a681c7451690328268d20 *inst/WORDLIST
2392b83af68b4a3082f989cd4c00350d *inst/doc/Introduction.R
360e51ccf7fa41c5b7cf2dba11f881ab *inst/doc/Introduction.Rmd
e243c61d5ac3b3cf9da09eac0fd27fa8 *inst/doc/Introduction.html
555a5ced648aed8719abc33f3f4366ee *inst/doc/Multi-Objective_Optimization_case_study.R
7ff67a38cac1f095381cbb7108c15afd *inst/doc/Multi-Objective_Optimization_case_study.Rmd
7186772629304adf1b19a93350632946 *inst/doc/Multi-Objective_Optimization_case_study.html
9670cfb7dcda04eaa328e16ce0ac5540 *inst/doc/Tutorial.R
42ebcf701ebc838899a21fb9ccef32fe *inst/doc/Tutorial.Rmd
1b1199a17a99c54f1f527bc298e82307 *inst/doc/Tutorial.html
b72d1b30c61ba428a701a64b84f8fb52 *inst/extdata/ecoli_core.tsv
34e9bc3813468a908c922b86fa89bd32 *inst/extdata/iJO1366.tsv
fd596135b8b405c3bb568109a253d841 *inst/extdata/nutrient_types.tsv
2d3143c1fe6a713a703430182ebb02ad *man/decompose_metabolites.Rd
e4b8372a4817bbb8276615be99198e78 *man/ecoli_core.Rd
e8350734027a13e999d06887b7c25641 *man/expanded_to_ROI.Rd
90bd4fecfeff54482f72ca7233c83b78 *man/expanded_to_glpk.Rd
5962f93077ae10c88034b6bf11664e1f *man/expanded_to_gurobi.Rd
76e834c9c38bfd6b6c832f52c63c835a *man/expanded_to_reactiontbl.Rd
bce2a805afa74ffd4c703863a815bab9 *man/fbar.Rd
d23abfab857a4986d35cdaa3c6be2f63 *man/find_flux_variability_df.Rd
f82c9649464b74155e19e06a79501663 *man/find_fluxes_df.Rd
126c64cac0c909016ab18b3510fcf3f1 *man/gene_associate.Rd
cb3b7a7854377c17924472fc2df05161 *man/gene_eval.Rd
51febeb91987688eb803390c9bf73a46 *man/get_BiGG.Rd
f037be618d2a20864138b3623bc98754 *man/iJO1366.Rd
609feb58aeb8a15abdfb4b90f8d811b1 *man/nutrient_types.Rd
38a530eb583f031d2fe724f9f0a46214 *man/parse_met_list.Rd
70ae9358e49e4b8e01370bd662d979f8 *man/reactiontbl_to_expanded.Rd
cccc48d5b34e5ebd476973faad94f8c5 *man/reactiontbl_to_gurobi.Rd
d1627b14c66630c2f3a8d9d4331ff8fe *man/recompose_metabolites.Rd
3f8b5db0453ac72f6b769d0bb85a9af3 *man/split_on_arrow.Rd
e085d3421db510c5ee56fed3450d0f44 *man/validate_expanded.Rd
78a7f421feb7208c58c9197ba4eb5edb *tests/spelling.R
7031aa2113b93166295980ecdfff1905 *tests/testthat.R
df009d8565016ba44c2798e6cb0a5769 *tests/testthat/test-ROI.R
8fa28521fc9345e1e5f229038c419064 *tests/testthat/test-ROI_plugins.R
5a6483e2a8e4281c7db5cc85d4bef224 *tests/testthat/test-convenience.R
7108ee3ff7f0b791ab3c38a7a6054b73 *tests/testthat/test-full-size.R
c8132d09b8cc0987c97f4a21f4bba4fd *tests/testthat/test-gene_expression_processing.R
6cbbf33b980936cd403c690e72973a04 *tests/testthat/test-metabolite-parsing.R
73e4b888e6519c4dbb9afbbeae95a036 *tests/testthat/test-parsing_and_conversion.R
56f7ca6325243eef30b48957a49d5ada *tests/testthat/test-utilities.R
360e51ccf7fa41c5b7cf2dba11f881ab *vignettes/Introduction.Rmd
7ff67a38cac1f095381cbb7108c15afd *vignettes/Multi-Objective_Optimization_case_study.Rmd
42ebcf701ebc838899a21fb9ccef32fe *vignettes/Tutorial.Rmd
