ed15e5a36f4e3ea9bd15b1c56caa6aea *DESCRIPTION
16da3247ae36c21338c61bb365a01b9c *NAMESPACE
55cbe5c4ca3365dd7a6d5734a776ff50 *NEWS.md
92274cad70436c7deff93b549badc97a *R/Ancillary_Indicators.R
d067a8824dd8bcee52b3dccd8c89ccb2 *R/HCRs.R
db9802a995cfd94d2d60c95996183906 *R/Misc_fun.R
a98010fe33f2f6970652964b4c08915b *R/RCM_data.R
818152ffbbe5a6911b6481e0b5a1e4df *R/RCM_int.R
e6ff6fe71ef87c1aa0750e44bc4a82bd *R/SAMtool-package.R
5273cd5ccdf0f3fc15c02f76fbab054c *R/assess_DD.R
157c6c3805b96027799687e5e0918cce *R/assess_SCA.R
c9446757d2e0f8dafb4aedd06b7d9fc6 *R/assess_SCA2.R
1d4d9ef60e88a22eb4ced46029fc0fe4 *R/assess_SCA_Pope.R
fa1197fd94d8e7675adbcf3b6607013e *R/assess_SCA_RWM.R
64c54aeb000334cf01d0111f2b7d0463 *R/assess_SP.R
627d0bdf1d09769c2a1613ca0876dda2 *R/assess_SSS.R
b79e14f93a3cc5060266f79b50489be2 *R/assess_VPA.R
1fed1699e970b4106d4a24555d52dac9 *R/assess_cDD.R
7d875ab48b1f1b804d4bb5ed2b0759c3 *R/assess_shortcut.R
566c6f04b6a5a5dcf18d75f48b4ebe7b *R/define_S4_class_RCModel.R
2df71989ad646bb07e9d25c3c6d614ed *R/define_S4_class_assess.R
c332e3da856ab8adeaecdb94fc24e0f7 *R/define_S4_class_profile.R
718fe3c28c3572fa1f5966248addf576 *R/define_S4_class_project.R
d468a48ecad1374f26a02b68c06bfafe *R/define_S4_class_retro.R
5559f089179876205af91adf71082b80 *R/define_S4_generic_RCM.R
a0743d25211f7ac3455c50c2f8770cb2 *R/diagnostic.R
66f0954f7e10290d8a62ed2397fedf96 *R/document_data.R
16ccc916915cf1e14d13d49281f2f492 *R/report_DD_TMB.R
26256926ee5497b6140c9e3b5d83692c *R/report_SCA.R
bb20290897a61b39ed1fef2b07e6bce0 *R/report_SCA_Pope.R
c4665eb5c3688e277c7d6a4ce5ca52ac *R/report_SCA_RWM.R
ce0d3d02ae6dc234bbf8961cbeef733c *R/report_SP.R
92049c53cb5f86ada794542bd4c3cccc *R/report_SSS.R
963fb783b76c57e65f41eb6ac831e88e *R/report_VPA.R
939b4c079d4a66368c2d3b6033ed09ef *R/report_auxiliary.R
b9984a39a1be2b342a56556b3ac077ea *R/report_cDD.R
c90f31c5dc364166eb496c967fab9eef *R/report_spict.R
e0332359a6d738a623b93bebe72497e1 *R/retrospective_AM.R
e73c073d627f1018f4057f70b51ae68f *R/rmd_report.R
46844a57e48e5c4c19ba3fff3c0f6733 *R/z_MPs.R
08c7c729136d6785713f93d1bc5df7b2 *build/vignette.rds
c6b176d217ef7fa8c8f03fc016d7058e *data/swordfish.rda
ccd1b4d17e653342f9157bc55fef3357 *inst/doc/Delay_difference.R
c49055e0b89a8be0566e2c31d106d160 *inst/doc/Delay_difference.Rmd
afb9b9d2301f77bf9135d05647a9b300 *inst/doc/Delay_difference.html
74abb5f6f24e6181ce225b69b6de1bde *inst/doc/RCM.R
71a043f4705d589a584e73084a251b58 *inst/doc/RCM.Rmd
b0082bb2c8d39c9120b2e3045faa0743 *inst/doc/RCM.html
529a560696f735b16537c81d888ac645 *inst/doc/RCM_eq.R
ba362b2f79ffc979b023a99310abc305 *inst/doc/RCM_eq.Rmd
ee106c3bad37cd8db516d9dff20f65b3 *inst/doc/RCM_eq.html
06a6814e8501f2b746bff0c5a4b1214e *inst/doc/RCM_sel.R
fe61667be915e8c3f2f78930bbafc89f *inst/doc/RCM_sel.Rmd
5459c4e79980a674fceec5fafdd7156d *inst/doc/RCM_sel.html
d4e8d1c477fd25f2ba4e7c1bc219856f *inst/doc/SAMtool.R
f8fe83cb20b2fce5558d2fbbb2c85483 *inst/doc/SAMtool.Rmd
a7a4032a78ddb00624263fcafc2cdc7d *inst/doc/SAMtool.html
ccd1b4d17e653342f9157bc55fef3357 *inst/doc/SCA.R
753c20f0a2fbfcf598df793f2badc7e7 *inst/doc/SCA.Rmd
07fef7f29a79a7b378d9ffb19f04d76f *inst/doc/SCA.html
ccd1b4d17e653342f9157bc55fef3357 *inst/doc/Surplus_production.R
f213a5e557a80c92244d4a89ad4633af *inst/doc/Surplus_production.Rmd
77a3887c8f3cf07cce9a71a5b82c7a24 *inst/doc/Surplus_production.html
ccd1b4d17e653342f9157bc55fef3357 *inst/doc/VPA.R
243765f408c0e3fbadfc2ec8ff5306a3 *inst/doc/VPA.Rmd
6aaa9178fb1b19603a5c11cc6076a8a0 *inst/doc/VPA.html
96e16f146332cf0b8a68223bb1537192 *inst/include/DD.hpp
339b686534b056511f17cd0f3eafda98 *inst/include/RCM.hpp
e6bb6fbf960ffbe61488f2a502a2aebd *inst/include/SCA.hpp
5c4885e8d4ac82742feaea9e11ead9a5 *inst/include/SCA2.hpp
a98d0a19e2fd0a5167b2ee2a18974ae5 *inst/include/SCA_Pope.hpp
b9ad771d207b4003e05261b09c4a16d6 *inst/include/SCA_RWM.hpp
a599cab76d99a1fc48478b94b0c72667 *inst/include/SP.hpp
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23b5c75e4d9c04e5b255f80ffc5533a2 *inst/include/cDD.hpp
b18427a0504b0a319de0fa3ff1770cfc *inst/include/functions.hpp
1993702debb02439d51ec22ec7ec0088 *inst/include/ns/ns_RCM.hpp
ba3a5cec8a78e1e0d447bb9a9858c2c7 *inst/include/ns/ns_SCA.hpp
5cbeee93f31fc0d1c3e9633a9acc6565 *inst/include/ns/ns_SP.hpp
ca8edc360ed3d77e9c635fe0f98b9237 *inst/include/ns/ns_VPA.hpp
8e4b0ade2983b37c1002367b9d80707b *inst/include/ns/ns_cDD.hpp
a79114f6902153b954e7725e3cefe63a *man/Assessment-class.Rd
4acccc682494dfac76f3fcee7b287323 *man/DD_TMB.Rd
1bf3e2f20e43a81ebac9b392c8af0475 *man/HCR_FB.Rd
45a42f91691af7556aa1b5b52581125d *man/HCR_MSY.Rd
58f3ceb8500556061c56e59aabe1cf9e *man/HCR_ramp.Rd
deb4bfa7f63131574a169915c67beecf *man/HCRlin.Rd
bae64bf866545405aef7d419fbfa41be *man/Model-based-MP.Rd
838fd32db771ea5fbcfef6f2720acf28 *man/PRBcalc.Rd
2ff10c056dc956d9757cf4584b334bb0 *man/Probs.Rd
ee746b84d7091eadf67dfdf9b2919b1d *man/RCM.Rd
ab1b48ae94866d14149381a699079b8f *man/RCModel-class.Rd
3be457ed17e518b77a8d22a41814ad7d *man/SAMtool-package.Rd
0166a5060c8c36b4bc16795065609ec7 *man/SCA.Rd
55e3ff5a43827755c0ea562ecbf5bd3c *man/SCA_RWM.Rd
80f768bc1653ce78cfc5d8eb5e9fe2a9 *man/SP.Rd
69cecb2b65f7d7d27a9fe9812dcd468c *man/SP_production.Rd
c289d6117517bf1290da37c4888f18bd *man/SSS.Rd
d73a51f28ca0ba97c61ce00e174724b3 *man/Shortcut.Rd
469ef44d7cb296a4c6519fab2ed90817 *man/TAC_MSY.Rd
4f83cc3181ca66b20200193cf6e10cbe *man/VPA.Rd
7c8253d3e459b96916fa796e2cb56f2c *man/cDD.Rd
a1a2969b099e8cabe5ad364f0af5c429 *man/compare_models.Rd
31da4c6ef0812b98426724c28a2fa131 *man/diagnostic.Rd
c37f14ef7c528b468efae8201c1bf2b4 *man/getinds.Rd
045b86752d50b0abd0b5903269b61acb *man/mahplot.Rd
97a6767447ca384e74876f69e0955bf9 *man/make_MP.Rd
58c219691febe18e1d6d42e892ec38b4 *man/plot.Assessment.Rd
5792e5f68682fae8bb0adec1772dd9cd *man/plot.RCModel.Rd
4684b365a5407f166342634486652e02 *man/plot.prof.Rd
973ccabc6d1633e96f31da5658c9f950 *man/plot.retro.Rd
2232fde44e077368299081084ec253a3 *man/plot_SR.Rd
b5530965d77001625145eb5889de36fc *man/plot_betavar.Rd
a71572feab1bab60f650437dee046603 *man/plot_composition.Rd
4bc1401c7046e7f1a3769826e76916b8 *man/plot_crosscorr.Rd
352fee8cf40f0207214c2e5037c7c967 *man/plot_lognormalvar.Rd
5437df95df9b46d10a5f461aeca89f36 *man/plot_residuals.Rd
06c1da01d4c059373ecff529f3b71657 *man/plot_steepness.Rd
7c351be5a6c862b2ce42e6dc3c9a0175 *man/plot_timeseries.Rd
a1685354377121287961fa58736e4e3d *man/prelim_AM.Rd
5a84f25a38245c0996e82219d4a831b8 *man/prof-class.Rd
802bb8ef75609c569075ff1929376ebe *man/profile.Rd
97b4670be2d84e773f3efaffd147c40a *man/project-class.Rd
1b73dc8f7948dde11ad69cf800bd7d7f *man/projection.Rd
a641755f1c1ea1a121de7a885aa1247d *man/retro-class.Rd
fd3443508395579f971081da05d10044 *man/retrospective.Rd
0d0253c4a90acead26c2a1b934da043a *man/retrospective_AM.Rd
ec55502a432cbabe44c048b4b6486655 *man/summary.Assessment.Rd
fc7af38ab1bf8aa48a9cdb8b65533609 *man/swordfish.Rd
d0d21ed7019742677288360089623955 *man/userguide.Rd
987f27c05f33c764e46d9aa65f940b4d *src/SAMtool.cpp
c49055e0b89a8be0566e2c31d106d160 *vignettes/Delay_difference.Rmd
71a043f4705d589a584e73084a251b58 *vignettes/RCM.Rmd
ba362b2f79ffc979b023a99310abc305 *vignettes/RCM_eq.Rmd
fe61667be915e8c3f2f78930bbafc89f *vignettes/RCM_sel.Rmd
f8fe83cb20b2fce5558d2fbbb2c85483 *vignettes/SAMtool.Rmd
753c20f0a2fbfcf598df793f2badc7e7 *vignettes/SCA.Rmd
f213a5e557a80c92244d4a89ad4633af *vignettes/Surplus_production.Rmd
243765f408c0e3fbadfc2ec8ff5306a3 *vignettes/VPA.Rmd
b4a0bf41a1eaf1559efa8e3250bce96a *vignettes/fig_assess/DD_TAC.png
3ec197c7fe04d9cb496b1b34080251cd *vignettes/fig_assess/DD_Tplot2.png
684863c6f4e4639408773e03d66b3883 *vignettes/fig_assess/DD_diagnostic_AM.png
a91f511c35ab8c13652486a5d03352f9 *vignettes/fig_assess/DD_profile.png
aca8c73b11a1c272977c925edf833f69 *vignettes/fig_assess/DD_retrospective_AM.png
2a6350673808da9e6e1f4f443950914c *vignettes/fig_assess/DLMtool_process.jpg
be67fe5fabbca2a8ddefee128df7be2c *vignettes/fig_assess/MSEtool_design.png
6f04e98d1655abb7d0772d36ef5c9636 *vignettes/fig_assess/SAMtool_design.png
ea02c21f9650267e82ad757fca69c21f *vignettes/fig_assess/Tplot.png
3df0e23da3b9584cce21a5701b075cb4 *vignettes/fig_assess/diagnostic_AM.png
2a0402c28d7a51497b377dd5c2b544f6 *vignettes/fig_assess/profile.png
26d721c30359516963bd36b453238957 *vignettes/fig_assess/retrospective.png
165b0433569f874fcb8a5224bcc7ec6e *vignettes/fig_assess/retrospective_AM.png
