e0659bce45023d7c77dfb90028910082 *DESCRIPTION
5f896e32a172deca52f531da678b50fc *NAMESPACE
cbe2dd7f94cc984f7057543f0b5c7f8e *R/RcppExports.R
3b9350ba79aefe20b8d6a83c24d247d9 *R/asr_empirical_probabilities.R
9dc91c47c8266a56bcb99176c4bca7ef *R/asr_independent_contrasts.R
56fe096ee609ad8b9e27a6596b11b254 *R/asr_max_parsimony.R
5112d138b12f1e6cb103805523335274 *R/asr_mk_model.R
d27dd7b3fc2066d9a30c0d3107ba722f *R/asr_squared_change_parsimony.R
85e213e01a074c44981a5c6e9ed04f92 *R/collapse_tree_at_resolution.R
55ce4e361b2755b0170f3b21db8ab2a1 *R/count_clades_over_time.R
d736e8020a5799df6ce10fb5d6b3baae *R/count_tips_per_node.R
5ca0e410c6967b748b8e0346666f9180 *R/exponentiate_matrix.R
f9464aa776174c47a929242481843e9f *R/find_nearest_tips.R
5e8a110182785dc41dcc0ac88f009ea0 *R/find_root.R
3ad627e73bbe710dd057641e33114bb4 *R/fit_random_tree_model.R
4553fb9d0b547ec84573bd093c166a73 *R/generate_random_tree.R
28af55d0af57073595d3665f34e2d902 *R/get_all_distances_to_root.R
10714e99dc514dcf8735baec012f43e7 *R/get_mrca_of_set.R
98db5cfef1ff5eadcd41ccdec94365f2 *R/get_pairwise_distances.R
104bfc11c5e63d24a47c0bb4f433bf46 *R/get_pairwise_mrcas.R
99218f67b88da59072522759d285d41c *R/get_random_mk_transition_matrix.R
f9de590cb60abf56cc29c154fccd9e85 *R/get_stationary_distribution.R
00b53255287248cf9dfc1c9f8595a423 *R/get_subtree_at_node.R
82804f00c01679e9cb617e7b854d4e33 *R/get_subtree_with_tips.R
12e0abb6593420120c6854dc4aca78a4 *R/get_tips_for_mrcas.R
60d15cce8a438d078b3cf16d844cb8e3 *R/get_trait_acf.R
6f75cc25f1ba8c13a1a448a716bccc10 *R/get_trait_depth.R
00a390a11e5650d166fc45918e6e957d *R/get_transition_index_matrix.R
bf67c1a32504565d4bbc24c6841e1de6 *R/get_transition_matrix_from_rate_vector.R
b412267bedf3561f21a8ffdf023f2f4b *R/get_tree_traversal_root_to_tips.R
913a972bd4b8717dbd0ce360f29bc94a *R/hsp_empirical_probabilities.R
0fd951700483a9896115f01d7d5627b2 *R/hsp_independent_contrasts.R
8ca74cbc1ddc81c6ecbb2a9044387157 *R/hsp_max_parsimony.R
7d9dbcac910c41bc3b7f265bdfbf2484 *R/hsp_mk_model.R
9c55c080c8c8a675d3f3b10b19c90567 *R/hsp_squared_change_parsimony.R
27e8f0013e26c11ea335fe3573f48183 *R/is_monophyletic.R
893d8418e77ffffe6b9a64521a72e28b *R/map_tip_or_node_names_to_indices.R
b3effc09d0c3d17cc1d607197ba3282b *R/map_to_state_space.R
385c63ffd14beb5e9e92cf7002000e94 *R/pick_random_tips.R
99658e44e24f36812b905179f039d394 *R/reorder_tree_edges.R
e0415b7887b37e57789904dc57e0e27b *R/root_at_node.R
44c65ec697ad46d0b1a170bfc87bcb68 *R/simulate_bm_model.R
9423692aba6da9ca9df4de4402332f6f *R/simulate_mk_model.R
a47138ce6b25ee4cac047f68c7b1fd87 *R/simulate_ou_model.R
6f8007e86da0ee981451a25e209fb528 *R/simulate_rou_model.R
c34d3c1dc4c0e949f06523ec3e8e918d *R/write_tree.R
bd2e73fa7681814d1e25bdc82314599d *inst/CITATION
48927d199ef125faf6e8c34cebaa980d *man/asr_empirical_probabilities.Rd
d781c4e6efd918f02e2575f60bd036d6 *man/asr_independent_contrasts.Rd
ae19f3d4806713f34a83ae1ece4fc48f *man/asr_max_parsimony.Rd
48d2b5d2f53fb80a61d1867166953ae7 *man/asr_mk_model.Rd
024cfb4da1ca4c615299058771fa23a1 *man/asr_squared_change_parsimony.Rd
701847cd35c1637bfc7124623e8ca6bb *man/castor.Rd
bda9b10e2370940465a9777b7ae85431 *man/collapse_tree_at_resolution.Rd
99c869f203744dc97b9a0b49fdbd3e7b *man/count_clades_over_time.Rd
bf5cc200a71b238178a1ab614d55b3b5 *man/count_tips_per_node.Rd
164411f08b5adabfdc2d15d87285fe55 *man/exponentiate_matrix.Rd
241560920a4c80fd2fd8e377fb829be8 *man/find_nearest_tips.Rd
f4cc1d8545750ca04df0c591e85cbd54 *man/find_root.Rd
b0c8366e2a0df336a654493c2c2b5477 *man/generate_random_tree.Rd
eeec64eaee69757501735a468e376629 *man/get_all_distances_to_root.Rd
64817e80126848ad5c4f82ce203f5f2a *man/get_mrca_of_set.Rd
7613165dd989168d5e425ea2e444f92c *man/get_pairwise_distances.Rd
bb5e6c7268b7ab80f579fb2073f97a69 *man/get_pairwise_mrcas.Rd
d9b6ce53d0a29ecbbd7bd1f4f30c7a61 *man/get_random_mk_transition_matrix.Rd
ed439b4a11de01cb319be81f1b60d176 *man/get_stationary_distribution.Rd
9a77ec74b9edb49a9f03f4f4300d811d *man/get_subtree_at_node.Rd
b01fd46dfcd6488544ed0e7d8e85f4fd *man/get_subtree_with_tips.Rd
bf73435e64f24c8a6c260c11975dde1a *man/get_tips_for_mrcas.Rd
a51e940e0bcb2a3aa5c6578018b2bf33 *man/get_trait_acf.Rd
529dd51b506aecc214fadbadd33697cc *man/get_trait_depth.Rd
f95fb7fa4b50df705b4dbc4d52a5e0b2 *man/get_tree_traversal_root_to_tips.Rd
ae58ebb696ca35139aad6bc4231baf8f *man/hsp_empirical_probabilities.Rd
4fe24c191962c63fa705f14c4a78fbdc *man/hsp_independent_contrasts.Rd
0283ae7bf389ee2ceaab880c5df2e8e9 *man/hsp_max_parsimony.Rd
bcf5ebef96c3e28857640342007ab759 *man/hsp_mk_model.Rd
decc67381549f0c6c5d8ce421c66b485 *man/hsp_squared_change_parsimony.Rd
39df595c7425b768d2e83790746da129 *man/is_monophyletic.Rd
9af14b79f52f18c84edec02ab0387d72 *man/map_to_state_space.Rd
fd6a48af2578ed15d57f4e56b330e08e *man/pick_random_tips.Rd
c49b4a0bd43481c3e341f42ea48492d6 *man/reorder_tree_edges.Rd
c12578470c8a4063030913c5040f7d77 *man/root_at_node.Rd
4a398a8b92c19d1f775ce325eec400da *man/simulate_bm_model.Rd
bfddf673a48ce5fa34fee902fd6db1c6 *man/simulate_mk_model.Rd
d8b3209c7e29078ff7f8768ca1545dc3 *man/simulate_ou_model.Rd
553ad40eabfe7d2c9ae55caf5741ef42 *man/simulate_rou_model.Rd
0e6a37d3da21d93e34bd9a5c3a8383de *man/write_tree.Rd
d61873affd612c2bf54d20eed1cdc721 *src/RcppExports.cpp
0dbaa8a8ef0fe7c2a23493a87487fd43 *src/phylogenetics_cpp_routines.cpp
7c22b1b500cab25872924e218f1645f5 *src/registerDynamicSymbol.c
