01d626c46287905ae3051d9140dab353 *DESCRIPTION
91f6df4d9568b3e5e382e3a5e6382012 *NAMESPACE
8f6ac5e3513ca1bce231ec9412b81184 *NEWS
83cdff1629e1673e38b1fc5832312fc7 *R/0__globalVars.R
5a49b0b9382d5f47555613ae2634652c *R/0_bedcollr.R
f678549be383a929f41c664fbb7b79b8 *R/0_cytoband.R
0703a6220da125ebe33997bc83bb1b8a *R/0_filePath.R
4b5ff9e2a2bfee5f7d51bfe0261ea6e2 *R/0_glm2.R
43f1de75f54c4b30e3ff0d80e4735f23 *R/0_head2.R
585fd6f884539ce0646bb0e26c7eafb2 *R/0_lenCheck.R
96290490bb15d0ac5432b54fec0ce07a *R/0_loadJava.R
b97428b697b43d2328531eb5c46b3173 *R/0_manhattan.R
e616ded7c2cde14992decd3e2f4478fe *R/0_nonExistentFiles.R
6c76af5a40b0f155d520dd0a70e3c104 *R/0_plinkr.R
5f76ab3d669c2f76b43039232b8c87a2 *R/0_readFactory.R
c7efb20dd8b89ded1aaad26767590dfe *R/0_sqlUtils.R
a7856e2b5c4aab42494dc43dbb99617a *R/0_strConcat.R
1ebc3ea37518ad5bcf57acd2614ec26f *R/0_utils.R
7c6627690edf9bedf953a9e1f2bc1ee8 *R/1_bedinfo.R
eb228631f4fefffb601eb51bbf625f7e *R/1_bigmatrixUtils.R
2e1be0ac20b9107696ed2128a2c46701 *R/1_rbedInfo.R
a26e6dd807176ab6675d54ed5d6a20e8 *R/2_plGwas.R
ac794c7e814b7c27acde87e50a2cc183 *R/3_permute.R
634c81163fde1c73cd7e36d76f293cda *R/4_haplo.R
bdef7467d3fccbe28569f6e3c74e5c59 *R/CollapsABEL.R
ac920d810db54b24a2d6a047eea1ec86 *R/snpPos.R
1bb7f81da78bc90af5a4948dfe3a622b *R/sysdata.rda
0e5896164227ed271f97a680e9dfa88b *man/CollapsABEL.Rd
9bdba551c6f765bec3c3098d44570658 *man/FilePath-class.Rd
63e5cfd4efd0ffb040eb48d94de44268 *man/PlGwasC-class.Rd
ab29ee36fd613453c66774dfec34b81c *man/PlInfoC-class.Rd
f34649838c903e0dc5483526afd939d7 *man/RbedInfoC-class.Rd
5ba705fec35c41b7b0d355c75ce3643e *man/ReadInfo-class.Rd
3329fccad1c899e18a526ba43567bb03 *man/alphaNumeric.Rd
bd41b2af7517780943321d2bcc2669f7 *man/asBigMatrix.Rd
f277bce0582bb2418f75054338434905 *man/assocFilter.Rd
a9be53127bb5f1f62fc23914e00ba30f *man/baseName.Rd
be23b1cafcf40daf204bd44811abd3cd *man/bedSizeCorrect.Rd
f28d64a00e9e2ed1228d46ffffeb3686 *man/bedcollr.Rd
47f96a1581c8d34d8da792675b116fb2 *man/bimCorrectTypes.Rd
c62ed190d6d49051096a0604083f9e23 *man/bin2DescFilename.Rd
1b63b908f7bd76f3f9f1c333458f0d37 *man/binPhe.Rd
b2c267f130cdb553fd389402def06539 *man/bmAddCol.Rd
5463bcf3bdbd78e5e5c8cbdb632bd818 *man/bmAttachBin.Rd
aef5d2dc86b1233da8d46f9ae1dec008 *man/bmConvertFun.Rd
29f48e11875d70ebec2eb4c875f92bb1 *man/bmFilename.Rd
39676ee0ab3a289bb18a69911c08aa2b *man/bmFilepath.Rd
eb95e81d43a35a988a21e3f2e6cd1f7f *man/bytesSnp.Rd
2c21379ffaf571e4c19829c52ab02dce *man/chExt.Rd
bea258b696e9906f77aea682a9e6cdbe *man/changeByMap.Rd
7b5e935e012cd1a476a36903af8c7d8c *man/charify.Rd
ef0e244490b90732a9fefbb58bb48cae *man/checkFileExist.Rd
4a9994e44365c1b19db62ed7745a14c2 *man/cmh.Rd
8ce851793081fe92aec94c7ad19773d8 *man/colClasses.Rd
9ccb5888ecb570a17bf8112b79b95842 *man/colCors.Rd
66768934048537e9c5c5b5b514032ca3 *man/collClear.Rd
23e3750b143e67ed001ac048b4b442b2 *man/collapse.Rd
25df102ac033291b20fe9133a5c557cb *man/collapseMat.Rd
0b5cd4ca29bc6b38f5e4aba8ece4cc6b *man/collenv.Rd
c9c4ddb627c183b1c696854768a49fd7 *man/connectSnpPair.Rd
ce0d26b5b007eb72c86b0375650fe573 *man/contrastData.Rd
d66e997339d0ef30a78eec0b5ee676fc *man/contrastPlot.Rd
ebdb2f444effe90e654f3318685538dd *man/correctDesc.Rd
50f11a39260a783d03830a137834625f *man/correctTypes_methods.Rd
ac7063799f10beb2283a2f627ab209a2 *man/covarNames.Rd
761848c7b6113e50ad39a2ad55307588 *man/cytoband.Rd
0712de2282bdb003b62d3e539cb33e56 *man/datToVec.Rd
bcd2a1cc8ab1e7da1b3b5fa1a6210c65 *man/desc2BinFilename.Rd
bf1e008327e71cf72edfc9b799821c8d *man/dir.create2.Rd
e6c0b2630be0cd4fafcc0aa70ba5f768 *man/dirName.Rd
b97c1ddf182515a5ae2d74ef5a1c46be *man/eprint.Rd
55a10a1c8678e219edd30ce2dd3abe7f *man/evalFile.Rd
0c5f8fb01aff399500622ed53a3b82e1 *man/famCorrectTypes.Rd
8da486b0ffa77779e10c78329db04d47 *man/fidIid.Rd
636a1f353400bf2bfd7e01a43438640d *man/file.create2.Rd
a24efa5ce3aed494c214ff1cf0223a94 *man/filePath.Rd
f583ae1d5d6a30579c7d6400b9e189f3 *man/fileSize.Rd
a4aa3a501c021f417fc4392f1583ede1 *man/gcdhBmCreate.Rd
daa6d980762d5cb77b0c2e4a1b8dd3d0 *man/gcdhDir.Rd
9fe6a7d840de3029485ea0d9436e127b *man/gcdhPower.Rd
a31d27cca6fba79ee9b3d270696ed5f8 *man/gcdhRegion.Rd
27ce6b89b91e03db9d49e43075956a37 *man/gcdhReport.Rd
d1e52b479619080e57e38a223e9a10f6 *man/getHaplo.Rd
abf538c8f679fa0ac920a0984c6a8b78 *man/getHaplos.Rd
2bc8f40114fa6a9617d7f7152dca688a *man/getOrElse-operator.Rd
f2cd170cbd56c096e8e11ea3b868771a *man/getQuery.Rd
6b7a67d0836c58b6c0bf694c99c01982 *man/getr2.Rd
8db47d5f1283d066e092744ac2df40f0 *man/glm2.Rd
b9f72b4c300cdcf57ca66617b53cdc94 *man/glmIter.Rd
54619b96293a5b7d540625f3021f4bf2 *man/gwasDat.Rd
4045212c1f7e08a08d5a802fe789de1a *man/gwasDir.Rd
8ebecf56dee281ecc367030417ee6090 *man/gwasLog.Rd
ecefab27c4dbd7e786538b50a909b4ea *man/gwasOut.Rd
438cf453e326692cec1818a8d0f3e553 *man/gwasOutStem.Rd
83e97b4728223974c5476ce8bcac98da *man/gwasR.Rd
6c44bad165266408b27bfd6622fd7b69 *man/gwasRDS.Rd
161e2ab125ce2089c392f11404064b71 *man/head2.Rd
3a40d1a24ecc868f109efd9b0b44a3d3 *man/headPhe.Rd
cdd0599b28d682f9b55ccf62ad54e124 *man/isBinary.Rd
51a434cc0f78d051f40324b68975f1b2 *man/isS4Class.Rd
ff37195f15ac82d31c10e712a1e22c12 *man/isSQLite3.Rd
5c6f76b2035b9b4c22f52393aa06017f *man/isSetup.Rd
7d23126705db03e4fc007032caa6e540 *man/isSetupRbed.Rd
e36d8e48d59f02b40a8326cb36b24669 *man/lagDistance.Rd
6a0957e4f7c0e06dcf3285dbea083d02 *man/lenCheck.Rd
e19928d6141d4e0b80d6338dd5882849 *man/listEqual.Rd
1d1328213e109540da35f7a0b31136af *man/listGwasTags.Rd
059e738f3d2963f9b73ff68f88e7a934 *man/loadGwas.Rd
da33b1fb11d9b81f952dc03aeec5bc7c *man/makePhe.Rd
e033446486e8a784ccbd0dc2c8890c23 *man/manhattanData.Rd
50c0a6e84cdbee9055e64ac431c24bee *man/manhattanPlot.Rd
e05f1144169f91fe179663cba8caf582 *man/nIndivApprPl.Rd
77226d5e500a621b809f4d9bd1431c2b *man/nIndivPl.Rd
99426b624b0e05559008037e2064f9c5 *man/nSnpPl.Rd
f87580e9aedb38cf0cb40b3bb9d89992 *man/nonExistentFiles.Rd
725f23c16bc09235cc1a0436a9e20763 *man/numVectorSQLRepr.Rd
49f817ef1ab6aaf9e3cc5a6675502dcc *man/permutePhe.Rd
0ff74698485ec58b74a3e1de94840f71 *man/plGwas.Rd
b75fbd26b7b3fd82132141e53587d480 *man/plInfo.Rd
502fa5ed4bb61e3d34bdb968a6ae81fb *man/plTrim.Rd
7e97a3fc59b0c4ff08b8aba00da8c119 *man/plinkr.Rd
87ac01444edf47288785d2424e8f9b14 *man/qq.Rd
237010cf462d9da30489a29ec0cb3574 *man/qq2.Rd
34b9b58b0b38ce88658f1b1b75be7e3c *man/qqmulti.Rd
97a3e144a9171722609873c43796bd23 *man/randNormDat.Rd
a9685fef6bcf28f06e332a866ee20fd1 *man/randomString.Rd
e6007e5d5e61fe24643723696de098a8 *man/randomStrings.Rd
3f4b0c9d4d40e23f299a267a3e42ecd5 *man/rbedInfo.Rd
fc0a62eee3e2274b816cf9a20b162af4 *man/read.phe.table.Rd
66f1066ee092090bc1a80edff35d1093 *man/readAssoc.Rd
718b88c2bc78445b343e4188f3ba12a3 *man/readBed.Rd
038bb0a16229331c3aa16a8ac6a64da4 *man/readBim.Rd
c0f5ffa60ef6c5ed58164bfa98ad1aee *man/readBmBin.Rd
0d07535fd507fa5289f0bdbf79f119b9 *man/readDesc.Rd
4738225808909fc6e39ca158251fc658 *man/readFam.Rd
95481ec44b91441086ef342dcfd5c408 *man/readFunFactory.Rd
d3955d3ea107099e9d523f8721ec283b *man/readGwasOut.Rd
4d192b2fbe80df8b4a613e88dcf49b0a *man/readInfo.Rd
f393d6131ac591cee50655bb70480d59 *man/readLiteral.Rd
a2e87d2aebf9f331c81a8f9ba79fec50 *man/readLogistic.Rd
edb81ff900043f06616a179e23ebe765 *man/readPhe.Rd
7a5bbcbcac871b5aa9c63ad8fb4e1fb1 *man/readPlinkOut.Rd
7dda9babad6e23bbae882aec4f18dd39 *man/readQassoc.Rd
2faf41a939b11d92f492d409671ee044 *man/realBedSize.Rd
24a257420d987713bd414b1e5eaa7662 *man/removeTag.Rd
cb6665e0315c7358e1bc726bc2cc4918 *man/reprClasses.Rd
9fd1ccfdd77b51b177ada50afa6e904c *man/rmFilesByStem.Rd
3fcdd50cde069f3d448454d354b62749 *man/runGcdh.Rd
577bc3d11b1af3bed90ff9de8756b3b1 *man/runGwas.Rd
a4cc03720d262dfc0364872ef607b8e8 *man/runTypeI.Rd
c4f7cd1ecd8768541e9e8bfb555c847e *man/saveDesc.Rd
ce20f05fe395a6559071b386a5d8b56c *man/sendQuery.Rd
e3a2e0be34ade2d52a3defc246aeda64 *man/setOptModel.Rd
b8571f9a9c2ec3fd4176d3017eff0d15 *man/setup.Rd
2ce8bfa0348ff335d07968ceff32c546 *man/setupRbed.Rd
fe53bb5f2e7d08e72f9c2e01ae36ede1 *man/shiftBed.Rd
9d61b8874af2507be1b11269f81ccf51 *man/shiftedStem.Rd
e19c1718339375e22e96d98dea8f53b0 *man/slurp.Rd
5c0cf804a0ea510ef0bfb45379262280 *man/snpPos.Rd
86b582fedcd7169b8f0f8d4365db18cd *man/snpRowId.Rd
234ed6c7bfbaae2b46d4dba06706c282 *man/spit.Rd
54cd760a0a09168a890f34fdc8da1318 *man/sqliteFilePl.Rd
b90780d4529c4e0c28d1c1ab82f232cd *man/stopFormat.Rd
ccca952bca47b52109e8d84795a0248d *man/strConcat.Rd
747c6dd700be8f44ddfb294239257e33 *man/strVectorRepr.Rd
537cdd0a0453261e4b17e06f991e29b9 *man/strVectorSQLRepr.Rd
5e63af92e036853f43a42429f02c49c3 *man/systemFormat.Rd
e6132cbdc6d350b9685fc41221c9d84a *man/theoBedSize.Rd
1ead733e2364c25ee336e3ffade20f2b *man/validPhe.Rd
9ae34ef99c9f1c672cd65b70d0e431db *man/write.phe.table.Rd
