* using log directory 'd:/Rcompile/CRANpkg/local/4.4/amt.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'amt/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'amt' version '0.3.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'amt' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [4s] OK * checking whether the package can be loaded with stated dependencies ... [4s] OK * checking whether the package can be unloaded cleanly ... [4s] OK * checking whether the namespace can be loaded with stated dependencies ... [4s] OK * checking whether the namespace can be unloaded cleanly ... [5s] OK * checking loading without being on the library search path ... [4s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [22s] OK * checking Rd files ... [7s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [8s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [30s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [40s] OK Running 'tinytest.R' [40s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [113s] ERROR Error(s) in re-building vignettes: --- re-building 'p1_getting_started.Rmd' using rmarkdown ERROR: Unknown command "TMPDIR=D:/temp/2025_12_05_01_50_00_7414/RtmpEB8K7Z/filed2885b41233". Did you mean command "preview"? --- finished re-building 'p1_getting_started.Rmd' --- re-building 'p2_hr.Rmd' using rmarkdown ERROR: Unknown command "TMPDIR=D:/temp/2025_12_05_01_50_00_7414/RtmpUDSQGG/file5b1449e94af9". Did you mean command "preview"? --- finished re-building 'p2_hr.Rmd' --- re-building 'p3_rsf.Rmd' using rmarkdown ERROR: Unknown command "TMPDIR=D:/temp/2025_12_05_01_50_00_7414/RtmpYtEgoi/filea03433f111d1". Did you mean command "remove"? --- finished re-building 'p3_rsf.Rmd' --- re-building 'p4_SSF.Rmd' using rmarkdown ERROR: Unknown command "TMPDIR=D:/temp/2025_12_05_01_50_00_7414/RtmpaMAc9c/file17b5c3ce2353e". Did you mean command "preview"? --- finished re-building 'p4_SSF.Rmd' --- re-building 'p5_other_packages.Rmd' using rmarkdown ERROR: Unknown command "TMPDIR=D:/temp/2025_12_05_01_50_00_7414/RtmpMjYfzg/file4b0421d6b99". Did you mean command "preview"? --- finished re-building 'p5_other_packages.Rmd' --- re-building 'p6_uhc_plots.Rmd' using rmarkdown Quitting from p6_uhc_plots.Rmd:60-78 [habitat] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! [rast] empty srs --- Backtrace: ▆ 1. ├─terra::rast(uhc_hab, type = "xyz", crs = "epsg:32612") 2. └─terra::rast(uhc_hab, type = "xyz", crs = "epsg:32612") 3. └─terra (local) .local(x, ...) 4. └─terra:::.rastFromXYZ(x, crs = crs, digits = digits, extent = extent) 5. ├─terra::rast(...) 6. └─terra::rast(...) 7. └─terra (local) .local(x = x, ...) 8. └─terra:::new_rast(...) 9. └─terra:::messages(r, "rast") 10. └─terra:::error(f, x@pntr$getError()) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'p6_uhc_plots.Rmd' failed with diagnostics: [rast] empty srs --- failed re-building 'p6_uhc_plots.Rmd' SUMMARY: processing the following file failed: 'p6_uhc_plots.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... [19s] OK * DONE Status: 1 ERROR