Mathematical and Statistical Tools in 'ribios'

Documentation for package ‘ribiosMath’ version 1.2.0

colKappa	Calculate column-wise kappa statistics of a matrix
cosdist	Calculate the cosine distance between two vectors (matrices)
cossim	Calculate the cosine similarity between two vectors (matrices)
davidClustering_kappa	Cluster rows of a Kappa-statistic-matrix by the hierarhical fuzzy multi-linkage partitioning method proposed by DAVID
davidClustering_kappa_R	Cluster rows of a Kappa-statistic-matrix by the hierarhical fuzzy multi-linkage partitioning method proposed by DAVID
empval	Get empirical p-value
kappaSimp	Calculate column-wise kappa statistics of a matrix, using a simple procedure by going through the matrix and counting
rowKappa	Calculate row-wise kappa statistics of a matrix
simulate_from_density	Simulate from density
tfidf	Calculate TF-IDF using a input matrix with terms in rows and documents in columns