* using log directory 'd:/Rcompile/CRANpkg/local/4.4/MetaComp.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'MetaComp/DESCRIPTION' ... OK
* this is package 'MetaComp' version '1.1.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MetaComp' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking LazyData ... NOTE
  'LazyData' is specified without a 'data' directory
* checking examples ... [5s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [25s] ERROR
  Running 'testthat.R' [24s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(MetaComp)
  > 
  > test_check("MetaComp")
  [1] "gottcha"
  [1] "kraken"
  Saving _problems/test_load_metaphlan_assignment-14.R
  Saving _problems/test_pipeline-37.R
  Saving _problems/test_plot_bwa_assignment-31.R
  Saving _problems/test_plot_diamond_assignment-31.R
  Saving _problems/test_plot_gottcha_assignment-31.R
  Saving _problems/test_plot_kraken_assignment-31.R
  Saving _problems/test_plot_merged_assignment_b-80.R
  Saving _problems/test_plot_merged_assignment_d-80.R
  Saving _problems/test_plot_merged_assignment_g-78.R
  Saving _problems/test_plot_merged_assignment_g2-78.R
  Saving _problems/test_plot_merged_assignment_k-80.R
  Saving _problems/test_plot_merged_assignment_m-80.R
  Saving _problems/test_plot_merged_assignment_p-81.R
  Saving _problems/test_plot_metaphlan_assignment-31.R
  Saving _problems/test_plot_pangia_assignment-31.R
  [ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
  Error in `matches("LEVEL")`: could not find function "matches"
  Backtrace:
      ▆
   1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
  ── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(...) at test_pipeline.R:37:1
  ── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
  ── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
  ── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
  ── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
  ── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
  ── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
  ── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
  ── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
  ── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
  ── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
  ── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
  ── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
  ── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
  Error in `is_true()`: could not find function "is_true"
  Backtrace:
      ▆
   1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
  
  [ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [16s] OK
* checking HTML version of manual ... [1s] OK
* DONE
Status: 1 ERROR, 1 NOTE