MEGENA-package          co-expression network analysis
MEGENA.ModuleSummary    MEGENA module summary
Sample_Expression.RData
                        Toy example data
calculate.PFN           PFN calculation
calculate.correlation   correlation calculation
compute.PFN.par         Parallelized PFN computation
datExpr                 Toy example data
do.MEGENA               MEGENA clustering + MHA
draw_sunburst_wt_fill   Draw sunburst plot showing MEGENA module
                        hierarchy.
get.DegreeHubStatistic
                        calculate module degree statistics based on
                        random triangulation model via T1 and T2 moves.
get.hub.summary         summarize hub information.
get.union.cut           Scale-thresholding of multiscale modules.
module_convert_to_table
                        conversion of module list object to a
                        data.frame table format
output.geneSet.file     output gene signatures into .gmt file format
planaritytest           Boyer-Myvold Planarity test of a network
plot_module             Module plotting function.
plot_module_hierarchy   Plot module hierarchy
plot_subgraph           subnetwork plotting functionality.
read.geneSet            .gmt file reader function
