# High-Dimensional Analysis of Variance

## Documentation for package ‘HDANOVA’ version 0.8.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

apca | ANOVA Principal Component Analysis - APCA
apls | Analysis of Variance Partial Least Squares - APLS
asca | Analysis of Variance Simultaneous Component Analysis - ASCA
asca_plots | ASCA Plot Methods
asca_results | ASCA Result Methods
biplot.asca | Biplot for ASCA models
block.data.frame | Block-wise indexable data.frame
caldana | Arabidopsis thaliana growth experiment
candies | Sensory assessment of candies.
dummycode | Dummy-coding of a single vector
extended.model.frame | Extracting the Extended Model Frame from a Formula or Fit
extract_estimates | Extract estimates for a given factor combination
hdanova | High-Dimensional Analysis of Variance
limmpca | Linear Mixed Model PCA
loadingplot.asca | ASCA Plot Methods
loadingplot.pcanova | PC-ANOVA Result Methods
loadings.asca | ASCA Result Methods
model.frame.asca | Model Frame and Model Matrix for ASCA-like Models
model.matrix.asca | Model Frame and Model Matrix for ASCA-like Models
msca | Multilevel Simultaneous Component Analysis - MSCA
pcanova | Principal Components Analysis of Variance Simultaneous Component Analysis - PC-ANOVA
pcanova_plots | PC-ANOVA Result Methods
pcanova_results | PC-ANOVA Result Methods
permanova | Permutation Based MANOVA - PERMANOVA
permutation | Permutation for HDANOVA
permutationplot | ASCA Plot Methods
pls | Partial Least Squares (PLS) for HDANOVA
pls.default | Partial Least Squares (PLS) for HDANOVA
prc | Principal Response Curves
print.asca | ASCA Result Methods
print.hdanova | ASCA Result Methods
print.pcanova | PC-ANOVA Result Methods
print.summary.asca | ASCA Result Methods
print.summary.hdanova | ASCA Result Methods
print.summary.pcanova | PC-ANOVA Result Methods
projections | ASCA Result Methods
projections.asca | ASCA Result Methods
projections.pcanova | PC-ANOVA Result Methods
sca | Simultaneous Component Analysis
scoreplot.asca | ASCA Plot Methods
scoreplot.pcanova | PC-ANOVA Result Methods
scores.asca | ASCA Result Methods
signflip | Flip signs of a component/factor combination in a SCA/PCA object
summary.asca | ASCA Result Methods
summary.hdanova | ASCA Result Methods
summary.pcanova | PC-ANOVA Result Methods
timeplot | Timeplot for Combined Effects
update_without_factor | Update a Model without Factor