* using log directory 'd:/Rcompile/CRANpkg/local/4.6/spam.Rcheck' * using R Under development (unstable) (2025-12-06 r89118 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'spam/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'spam' version '2.11-1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'spam' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 14.3.0' * used Fortran compiler: 'GNU Fortran (GCC) 14.3.0' * used C++ compiler: 'g++.exe (GCC) 14.3.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking whether startup messages can be suppressed ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [20s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [10s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [31s] ERROR Running 'demo_cholesky.R' [1s] Comparing 'demo_cholesky.Rout' to 'demo_cholesky.Rout.save' ... OK Running 'demo_jss10-example1.R' [2s] Comparing 'demo_jss10-example1.Rout' to 'demo_jss10-example1.Rout.save' ... OK Running 'demo_jss10-figures-table.R' [6s] Comparing 'demo_jss10-figures-table.Rout' to 'demo_jss10-figures-table.Rout.save' ... OK Running 'demo_jss15-BYM.R' [2s] Comparing 'demo_jss15-BYM.Rout' to 'demo_jss15-BYM.Rout.save' ... OK Running 'demo_jss15-Leroux.R' [3s] Comparing 'demo_jss15-Leroux.Rout' to 'demo_jss15-Leroux.Rout.save' ... OK Running 'demo_spam.R' [1s] Comparing 'demo_spam.Rout' to 'demo_spam.Rout.save' ... OK Running 'demo_timing.R' [3s] Comparing 'demo_timing.Rout' to 'demo_timing.Rout.save' ... OK Running 'jss_areal_counts.R' [2s] Comparing 'jss_areal_counts.Rout' to 'jss_areal_counts.Rout.save' ... OK Running 'testthat.R' [9s] Running the tests in 'tests/testthat.R' failed. Complete output: > # HEADER #################################################### > # This is file spam/tests/testthat.R. # > # It is part of the R package spam, # > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # > # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > > library("testthat") > # library("spam") > > test_check("spam") Loading required package: spam Spam version 2.11-1 (2025-01-20) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the suffix '.spam' to the function name, e.g. 'help( chol.spam)'. Attaching package: 'spam' The following objects are masked from 'package:base': backsolve, forwardsolve Saving _problems/test-diff-33.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 729 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-diff.R:33:5'): diff ────────────────────────────────────────── Expected `diff(x, 4, d = 4)` to equal `diff(as.spam(x), 4, d = 4)`. Differences: Attributes: < Modes: list, NULL > Attributes: < Lengths: 1, 0 > Attributes: < names for target but not for current > Attributes: < current is not list-like > [ FAIL 1 | WARN 0 | SKIP 0 | PASS 729 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [24s] OK * checking PDF version of manual ... [23s] OK * checking HTML version of manual ... [19s] OK * DONE Status: 1 ERROR