* using log directory 'd:/Rcompile/CRANpkg/local/4.5/GPCERF.Rcheck' * using R version 4.5.2 (2025-10-31 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'GPCERF/DESCRIPTION' ... OK * this is package 'GPCERF' version '0.2.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GPCERF' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 14.3.0' * checking C++ specification ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [3s] OK * checking whether startup messages can be suppressed ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [5s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [146s] ERROR Running 'testthat.R' [146s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-07 09:21:17.114046 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-07 09:21:22.963045 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-07 09:21:28.917937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-07 09:21:37.906501 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:21:43.295393 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:21:48.5217 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=27524 on localhost:11772 at 09:21:48.807 2026-01-07 09:21:51.492925 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.97000000000001 s. 2026-01-07 09:21:51.572678 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:21:57.483563 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:03.252271 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-07 09:22:09.361009 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:14.96016 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:18.549809 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:23.108796 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:23.122847 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:28.440489 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.452898 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.461225 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.471676 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.480077 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.489696 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.500732 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.516936 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:33.534709 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 starting worker pid=82400 on localhost:11772 at 09:22:33.801 starting worker pid=33968 on localhost:11772 at 09:22:33.852 2026-01-07 09:22:40.92937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:46.552524 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:46.555454 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:22:46.559623 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=99404 on localhost:11772 at 09:22:46.820 2026-01-07 09:22:49.623891 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.05999999999999 s.} ... 2026-01-07 09:22:49.626153 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=105556 on localhost:11772 at 09:22:49.878 2026-01-07 09:22:52.388816 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.75 s. 2026-01-07 09:22:52.391919 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=76496 on localhost:11772 at 09:22:52.702 2026-01-07 09:22:56.076346 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.68000000000001 s. 2026-01-07 09:22:56.079143 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.53 s. 2026-01-07 09:22:56.083799 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:56.086699 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:22:56.099104 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:56.101404 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:22:56.143046 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:56.145554 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:22:56.157861 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:00.46251 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:23:00.465065 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:23:00.476378 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:23:00.479095 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:23:00.517118 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-07 09:23:05.955452 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:11.266958 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=107288 on localhost:11772 at 09:23:11.526 2026-01-07 09:23:14.0467 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.78 s. 2026-01-07 09:23:14.049096 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=27816 on localhost:11772 at 09:23:14.321 2026-01-07 09:23:17.215913 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.16 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-07 09:23:17.269341 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:21.954476 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:27.52312 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=57564 on localhost:11772 at 09:23:27.794 2026-01-07 09:23:30.289776 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.77000000000001 s. 2026-01-07 09:23:30.317935 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:35.670567 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=87672 on localhost:11772 at 09:23:35.908 2026-01-07 09:23:39.186142 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.5 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [120s] OK * checking PDF version of manual ... [17s] OK * checking HTML version of manual ... [5s] OK * DONE Status: 1 ERROR