Package: polyqtlR
Type: Package
Title: QTL Analysis in Autopolyploid Bi-Parental F1 Populations
Version: 0.1.1
Date: 2024-01-08
Authors@R: c(person("Peter","Bourke", email = "pbourkey@gmail.com", role = c("aut","cre")),
          person("Christine","Hackett", role = "ctb"),
             person("Chris","Maliepaard", role = "ctb"),
             person("Geert","van Geest", role = "ctb"),
             person("Roeland","Voorrips", role = "ctb"),
             person("Johan","Willemsen", role = "ctb"))
Maintainer: Peter Bourke <pbourkey@gmail.com>
Description: Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in 
    autopolyploid bi-parental F1 populations. 
    For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated.
    Significance thresholds, exploring QTL allele effects and visualising results are provided. 
    For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.
Depends: R (>= 3.5.0)
Imports: abind, doParallel, foreach, grDevices, graphics, Hmisc, knitr,
        nlme, RColorBrewer, Rcpp (>= 0.12.19), reshape2, stats, utils
Suggests: igraph, mappoly (>= 0.3.0), polymapR, rmarkdown
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
VignetteBuilder: knitr
LazyData: true
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2024-01-09 08:02:35 UTC; bourk001
Author: Peter Bourke [aut, cre],
  Christine Hackett [ctb],
  Chris Maliepaard [ctb],
  Geert van Geest [ctb],
  Roeland Voorrips [ctb],
  Johan Willemsen [ctb]
Repository: CRAN
Date/Publication: 2024-01-09 08:20:08 UTC
Built: R 4.4.3; x86_64-w64-mingw32; 2025-12-08 04:49:44 UTC; windows
Archs: x64
