* using log directory 'd:/Rcompile/CRANpkg/local/4.4/omicsTools.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'omicsTools/DESCRIPTION' ... OK
* this is package 'omicsTools' version '1.0.5'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'omicsTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking whether startup messages can be suppressed ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [10s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [7s] ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(omicsTools)
This is omicsTools version 1.0.5.
omicsTools is free software and comes with ABSOLUTELY NO WARRANTY.
Please use at your own risk.
>
> test_check("omicsTools")
Loading required package: shiny
Saving _problems/test-golem_utils_ui-99.R
Saving _problems/test-golem_utils_ui-105.R
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-golem-recommended.R:72:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-golem_utils_ui.R:96:3'): Test undisplay works ────────────────
Expected `as.character(b)` to equal "".
Differences:
lines(actual) vs lines(expected)
- ""
+ ""
── Failure ('test-golem_utils_ui.R:102:3'): Test undisplay works ───────────────
Expected `as.character(b_undisplay)` to equal "".
Differences:
lines(actual) vs lines(expected)
- ""
+ ""
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ]
Error:
! Test failures.
Execution halted
* checking PDF version of manual ... [16s] OK
* checking HTML version of manual ... [1s] OK
* DONE
Status: 1 ERROR