* using log directory 'd:/Rcompile/CRANpkg/local/4.4/FastRet.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'FastRet/DESCRIPTION' ... OK
* this is package 'FastRet' version '1.1.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FastRet' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [6s] OK
* checking whether the package can be loaded with stated dependencies ... [5s] OK
* checking whether the package can be unloaded cleanly ... [6s] OK
* checking whether the namespace can be loaded with stated dependencies ... [5s] OK
* checking whether the namespace can be unloaded cleanly ... [6s] OK
* checking loading without being on the library search path ... [5s] OK
* checking whether startup messages can be suppressed ... [5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [23s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [25s] ERROR
  Running 'testthat.R' [25s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(FastRet)
  > 
  > test_check("FastRet")
  Starting 2 test processes.
  Saving _problems/test-train_frm-gbtree-11.R
  > test-read_rp_xlsx.R: WARNING: An illegal reflective access operation has occurred
  > test-read_rp_xlsx.R: WARNING: Illegal reflective access by org.apache.poi.openxml4j.util.ZipSecureFile (file:/D:/RCompile/CRANpkg/lib/4.4/xlsxjars/java/poi-ooxml-3.13-20150929.jar) to field java.io.FilterInputStream.in
  > test-read_rp_xlsx.R: WARNING: Please consider reporting this to the maintainers of org.apache.poi.openxml4j.util.ZipSecureFile
  > test-read_rp_xlsx.R: WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
  > test-read_rp_xlsx.R: WARNING: All illegal access operations will be denied in a future release
  > test-read_rp_xlsx.R: 
  > test-plot_frm.R: 2025-12-05 07:38:19.12 Starting training of a lasso model
  > test-plot_frm.R: 2025-12-05 07:38:19.12 Mocking is enabled. Returning 'mockdata/lasso_model.rds'
  Saving _problems/test-fit_gbtree-8.R
  Saving _problems/test-fit_gbtree-16.R
  > test-plot_frm.R: 2025-12-05 07:38:19.39 Starting training of a lasso model
  > test-plot_frm.R: 2025-12-05 07:38:19.39 Parallel processing is not supported on Windows. Setting `nw` to 1.
  > test-plot_frm.R: 2025-12-05 07:38:19.39 Mocking is enabled. Returning 'mockdata/lasso_model.rds'
  > test-plot_frm.R: 2025-12-05 07:38:19.40 Starting model Adjustment
  > test-plot_frm.R: 2025-12-05 07:38:19.40 dim(original_data): 442 x 126
  > test-plot_frm.R: 2025-12-05 07:38:19.40 dim(new_data): 25 x 3
  > test-plot_frm.R: 2025-12-05 07:38:19.53 predictors: 1, 2, 3, 4, 5, 6
  > test-plot_frm.R: 2025-12-05 07:38:19.53 nfolds: 5
  > test-plot_frm.R: 2025-12-05 07:38:19.53 Preprocessing data
  > test-plot_frm.R: 2025-12-05 07:38:19.56 Formula: RT_ADJ ~ RT + I(RT^2) + I(RT^3) + log(RT) + exp(RT) + sqrt(RT)
  > test-plot_frm.R: 2025-12-05 07:38:19.57 Estimating performance of adjusted model in CV
  > test-plot_frm.R: 2025-12-05 07:38:19.65 Fitting adjustment model on full new data set
  > test-plot_frm.R: 2025-12-05 07:38:19.66 Returning adjusted frm object
  > test-adjust_frm.R: WARNING: An illegal reflective access operation has occurred
  > test-adjust_frm.R: WARNING: Illegal reflective access by org.apache.poi.openxml4j.util.ZipSecureFile (file:/D:/RCompile/CRANpkg/lib/4.4/xlsxjars/java/poi-ooxml-3.13-20150929.jar) to field java.io.FilterInputStream.in
  > test-adjust_frm.R: WARNING: Please consider reporting this to the maintainers of org.apache.poi.openxml4j.util.ZipSecureFile
  > test-adjust_frm.R: WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
  > test-adjust_frm.R: WARNING: All illegal access operations will be denied in a future release
  > test-adjust_frm.R: 
  > test-selective_measuring.R: 2025-12-05 07:38:20.35 Starting Selective Measuring
  > test-selective_measuring.R: 2025-12-05 07:38:20.35 Preprocessing input data
  > test-selective_measuring.R: 2025-12-05 07:38:20.35 Mocking is enabled for 'preprocess_data'. Returning 'mockdata/RPCD_prepro.rds'.
  > test-selective_measuring.R: 2025-12-05 07:38:20.35 Standardizing features
  > test-selective_measuring.R: 2025-12-05 07:38:20.36 Training Ridge Regression model
  > test-selective_measuring.R: 2025-12-05 07:38:20.36 Fitting Ridge model
  > test-adjust_frm.R: 2025-12-05 07:38:20.73 Starting model Adjustment
  > test-adjust_frm.R: 2025-12-05 07:38:20.73 dim(original_data): 442 x 126
  > test-adjust_frm.R: 2025-12-05 07:38:20.73 dim(new_data): 25 x 3
  > test-adjust_frm.R: 2025-12-05 07:38:20.73 predictors: 1, 2
  > test-adjust_frm.R: 2025-12-05 07:38:20.73 nfolds: 5
  > test-adjust_frm.R: 2025-12-05 07:38:20.73 Preprocessing data
  > test-adjust_frm.R: 2025-12-05 07:38:20.74 Formula: RT_ADJ ~ RT + I(RT^2)
  > test-adjust_frm.R: 2025-12-05 07:38:20.74 Estimating performance of adjusted model in CV
  > test-adjust_frm.R: 2025-12-05 07:38:20.83 Fitting adjustment model on full new data set
  > test-adjust_frm.R: 2025-12-05 07:38:20.83 Returning adjusted frm object
  > test-adjust_frm.R: 2025-12-05 07:38:20.83 Starting model Adjustment
  > test-adjust_frm.R: 2025-12-05 07:38:20.83 dim(original_data): 442 x 126
  > test-adjust_frm.R: 2025-12-05 07:38:20.83 dim(new_data): 25 x 3
  > test-adjust_frm.R: 2025-12-05 07:38:20.83 predictors: 1, 2, 3, 4, 5, 6
  > test-adjust_frm.R: 2025-12-05 07:38:20.83 nfolds: 5
  > test-adjust_frm.R: 2025-12-05 07:38:20.83 Preprocessing data
  > test-adjust_frm.R: 2025-12-05 07:38:20.84 Formula: RT_ADJ ~ RT + I(RT^2) + I(RT^3) + log(RT) + exp(RT) + sqrt(RT)
  > test-adjust_frm.R: 2025-12-05 07:38:20.84 Estimating performance of adjusted model in CV
  > test-adjust_frm.R: 2025-12-05 07:38:20.91 Fitting adjustment model on full new data set
  > test-adjust_frm.R: 2025-12-05 07:38:20.91 Returning adjusted frm object
  > test-selective_measuring.R: 2025-12-05 07:38:21.00 End training
  > test-selective_measuring.R: 2025-12-05 07:38:21.00 Scaling features by coefficients of Ridge Regression model
  > test-selective_measuring.R: 2025-12-05 07:38:21.01 Applying PAM clustering
  > test-selective_measuring.R: 2025-12-05 07:38:21.62 Returning clustering results
  [ FAIL 3 | WARN 3 | SKIP 0 | PASS 19 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-train_frm-gbtree.R:5:5'): train_frm works if `method == "GBTree"` ──
  Error in `begin_iteration:end_iteration`: argument of length 0
  Backtrace:
      ▆
   1. └─FastRet::train_frm(...) at test-train_frm-gbtree.R:5:5
   2.   └─parallel::mclapply(...)
   3.     └─base::lapply(X, FUN, ...)
   4.       └─FastRet (local) FUN(X[[i]], ...)
   5.         └─FastRet (local) fit(df[train, ], verbose = 0)
   6.           └─FastRet:::fit_gbtree_grid(...)
   7.             └─xgboost::xgb.train(...)
  ── Error ('test-fit_gbtree.R:8:5'): fit.gbtrees works as expected ──────────────
  Error in `begin_iteration:end_iteration`: argument of length 0
  Backtrace:
      ▆
   1. └─FastRet:::fit_gbtree(df, verbose = 0) at test-fit_gbtree.R:8:5
   2.   └─FastRet:::fit_gbtree_grid(...)
   3.     └─xgboost::xgb.train(...)
  ── Error ('test-fit_gbtree.R:16:5'): fit.gbtrees works for data from reverse phase column ──
  Error in `begin_iteration:end_iteration`: argument of length 0
  Backtrace:
      ▆
   1. └─FastRet:::fit_gbtree(df, verbose = 0) at test-fit_gbtree.R:16:5
   2.   └─FastRet:::fit_gbtree_grid(...)
   3.     └─xgboost::xgb.train(...)
  
  [ FAIL 3 | WARN 3 | SKIP 0 | PASS 19 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... [5s] OK
* DONE
Status: 1 ERROR