AAindex                 A data frame of 533 amino acid properties from
                        AAindex.
Cruciani                A data frame of 3 Cruciani properties for 20
                        amino acids.
Fasgai                  A data frame of six Fasgai vectors for 20 amino
                        acids.
Kidera                  A data frame of 10 Kidera factors for 20 amino
                        acids
corSubFile              A data frame of correlated sites.
getAASub                Get amino acid substitutions from multiple
                        sequence alignment
getCorPropChange        Get property changes associated with correlated
                        substitutions
getCorSites             Get correlated sites with substitutions
getPropChange           Get wild type and substituted amino acid
                        properties and associated property changes
getPropCorr             Get amino acid property wise correlations of
                        co-evolving columns of a multiple sequence
                        alignment
getTopSub               Get sites with more than one-correlated
                        substitutions other than conserved amino acids
                        at that position
matEncode               Function to encode Correlated columns of
                        alignment matrix with desired properties
plotCorNet              simple interactive network diagram of
                        correlated substitution pairs
plotCorSubChanges       Plot co-evolving sites with selected property
                        correlations
plotMultiSubChange      Plots heat map of multiple substitution
                        associated changes per site
plotSingleSubChange     Plots single substitution change histogram
startSeaShiny           Title Enables to start and run the app
