NAME App::Fasops - operating blocked fasta files SYNOPSIS fasops [-?h] [long options...] -? -h --help show help Available commands: commands: list the application's commands help: display a command's help screen axt2fas: convert axt to blocked fasta covers: scan blocked fasta files and output covers on chromosomes join: join multiple blocked fasta files by common target links: scan blocked fasta files and output bi/multi-lateral range links maf2fas: convert maf to blocked fasta names: scan blocked fasta files and output all species names refine: realign blocked fasta file with external programs replace: replace headers from a blocked fasta separate: separate blocked fasta files by species slice: extract alignment slices from a blocked fasta split: split blocked fasta files to separate per-alignment files subset: extract a subset of species from a blocked fasta See fasops commands for usage information. AUTHOR Qiang Wang COPYRIGHT AND LICENSE This software is copyright (c) 2014 by Qiang Wang. This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.