Causal Graph Interface

Documentation for package ‘caugi’ version 1.0.0

Help Pages

-- A --

add-caugi_plot-caugi_plot	Compose Plots Horizontally
add_edges	Manipulate nodes and edges of a 'caugi'
add_nodes	Manipulate nodes and edges of a 'caugi'
adjustment_set	Compute an adjustment set
aid	Adjustment Identification Distance
all_adjustment_sets_admg	Get all valid adjustment sets in an ADMG
all_backdoor_sets	Get all backdoor sets up to a certain size.
ancestors	Get ancestors of nodes in a 'caugi'
anteriors	Get anteriors of nodes in a 'caugi'
as_adjacency	Convert a caugi to an adjacency matrix
as_bnlearn	Convert a caugi to a bnlearn network
as_caugi	Convert to a 'caugi'
as_dagitty	Convert a caugi to a dagitty graph
as_igraph	Convert a caugi to an igraph object

-- B --

Build the graph now

-- C --

caugi	Create a 'caugi' from edge expressions.
caugi_default_options	Default options for caugi
caugi_deserialize	Deserialize caugi Graph from JSON String
caugi_dot	S7 Class for DOT Export
caugi_export	S7 Base Class for Caugi Exports
caugi_graphml	S7 Class for GraphML Export
caugi_layout	Compute Graph Layout
caugi_layout_bipartite	Bipartite Graph Layout
caugi_layout_fruchterman_reingold	Fruchterman-Reingold Force-Directed Layout
caugi_layout_kamada_kawai	Kamada-Kawai Stress Minimization Layout
caugi_layout_sugiyama	Sugiyama Hierarchical Layout
caugi_layout_tiered	Tiered Graph Layout
caugi_mermaid	S7 Class for Mermaid Export
caugi_options	Get or set global options for caugi
caugi_plot	S7 Class for caugi Plot
caugi_registry	'caugi' edge registry
caugi_serialize	Serialize caugi Graph to JSON String
caugi_verbs	Manipulate nodes and edges of a 'caugi'
children	Get children of nodes in a 'caugi'
condition_marginalize	Marginalize and/or condition on variables in an ancestral graph (AG)

-- D --

descendants	Get descendants of nodes in a 'caugi'
districts	Get districts (c-components) of an ADMG
divide-caugi_plot-caugi_plot	Compose Plots Vertically
d_separated	Are X and Y d-separated given Z?

-- E --

E	Get edges of a 'caugi'.
edges	Get edges of a 'caugi'.
edge_types	Get the edge types of a 'caugi'.
exogenize	Exogenize a graph
exogenous	Get all exogenous nodes in a 'caugi'
export-classes	Export Format Classes

-- F --

format-caugi	Caugi Native Format Serialization
format-dot	DOT Format Export and Import
format-graphml	GraphML Format Export and Import
format-mermaid	Mermaid Format Export

-- G --

Generate a 'caugi' using Erdős-Rényi.

-- H --

hd	Hamming Distance

-- I --

is_acyclic	Is the 'caugi' acyclic?
is_admg	Is the 'caugi' graph an ADMG?
is_ag	Is the 'caugi' graph an AG?
is_caugi	Is it a 'caugi' graph?
is_cpdag	Is the 'caugi' graph a CPDAG?
is_dag	Is the 'caugi' graph a DAG?
is_empty_caugi	Is the 'caugi' graph empty?
is_mag	Is the 'caugi' graph a MAG?
is_pdag	Is the 'caugi' graph a PDAG?
is_ug	Is the 'caugi' graph an UG?
is_valid_adjustment_admg	Is a set a valid adjustment set in an ADMG?
is_valid_backdoor	Is a backdoor set valid?

-- K --

Knit Print Method for caugi_export

-- L --

latent_project	Project latent variables from a DAG to an ADMG
length	Length of a 'caugi'

-- M --

markov_blanket	Get Markov blanket of nodes in a 'caugi'
moralize	Moralize a DAG
mutate_caugi	Mutate 'caugi' class
m_separated	M-separation test for AGs and ADMGs

-- N --

neighbors	Get neighbors of nodes in a 'caugi'
neighbours	Get neighbors of nodes in a 'caugi'
nodes	Get nodes or edges of a 'caugi'

-- P --

parents	Get parents of nodes in a 'caugi'
pipe-caugi_plot-caugi_plot	Compose Plots Horizontally
plot	Create a caugi Graph Plot Object
print	Print a 'caugi'

-- R --

read_caugi	Read caugi Graph from File
read_graphml	Read GraphML File to caugi Graph
register_caugi_edge	Register a new edge type in the global registry.
registry	'caugi' edge registry
remove_edges	Manipulate nodes and edges of a 'caugi'
remove_nodes	Manipulate nodes and edges of a 'caugi'
reset_caugi_registry	'caugi' edge registry

-- S --

same_nodes	Same nodes?
seal_caugi_registry	'caugi' edge registry
set_edges	Manipulate nodes and edges of a 'caugi'
shd	Structural Hamming Distance
simulate_data	Simulate data from a 'caugi' DAG.
skeleton	Get the skeleton of a graph
spouses	Get spouses (bidirected neighbors) of nodes in an ADMG
subgraph	Get the induced subgraph

-- T --

topological_sort	Get a topological ordering of a DAG
to_dot	Export caugi Graph to DOT Format
to_graphml	Export caugi Graph to GraphML Format
to_mermaid	Export caugi Graph to Mermaid Format

-- V --

V	Get nodes or edges of a 'caugi'
vertices	Get nodes or edges of a 'caugi'

-- W --

write_caugi	Write caugi Graph to File
write_dot	Write caugi Graph to DOT File
write_graphml	Write caugi Graph to GraphML File
write_mermaid	Write caugi Graph to Mermaid File