Characterise Tables of an OMOP Common Data Model Instance

---

Documentation for package ‘OmopSketch’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

clinicalTables	Tables in the cdm_reference that contain clinical information
databaseCharacteristics	Summarise Database Characteristics for OMOP CDM
mockOmopSketch	Creates a mock database to test OmopSketch package
plotConceptSetCounts	Plot the concept counts of a summariseConceptSetCounts output
plotInObservation	Create a ggplot2 plot from the output of summariseInObservation()
plotObservationPeriod	Create a plot from the output of summariseObservationPeriod()
plotPerson	Visualise the output of 'summarisePerson()'
plotRecordCount	Create a ggplot of the records' count trend
plotTrend	Create a ggplot2 plot from the output of summariseTrend()
shinyCharacteristics	Generate an interactive Shiny application that visualises the results obtained from the 'databaseCharacteristics()' function
summariseClinicalRecords	Summarise an omop table from a cdm object
summariseConceptCounts	Summarise concept counts in patient-level data
summariseConceptIdCounts	Summarise concept use in patient-level data
summariseConceptSetCounts	Summarise concept counts in patient-level data
summariseInObservation	Summarise the number of people in observation during a specific interval of time
summariseMissingData	Summarise missing data in omop tables
summariseObservationPeriod	Summarise the observation period table getting some overall statistics in a summarised_result object
summariseOmopSnapshot	Summarise a cdm_reference object creating a snapshot with the metadata of the cdm_reference object
summarisePerson	Summarise person table
summariseRecordCount	Summarise record counts of an omop_table using a specific time interval
summariseTrend	Summarise temporal trends in OMOP tables
tableClinicalRecords	Create a visual table from a summariseClinicalRecord() output
tableConceptIdCounts	Create a visual table from a summariseConceptIdCounts() result
tableInObservation	Create a visual table from a summariseInObservation() result
tableMissingData	Create a visual table from a summariseMissingData() result
tableObservationPeriod	Create a visual table from a summariseObservationPeriod() result
tableOmopSnapshot	Create a visual table from a summarise_omop_snapshot result
tablePerson	Visualise the results of 'summarisePerson()' into a table
tableRecordCount	Create a visual table from a summariseRecordCount() result
tableTopConceptCounts	Create a visual table of the most common concepts from 'summariseConceptIdCounts()' output
tableTrend	Create a visual table from a summariseTrend() result